Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23386 | 3' | -57.8 | NC_005259.1 | + | 16611 | 0.78 | 0.112939 |
Target: 5'- cGGACUGUUcaacggGCCGAGGCAGGcCACCUaCGg -3' miRNA: 3'- -UCUGACGG------UGGCUCCGUUC-GUGGA-GC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 34531 | 0.78 | 0.112939 |
Target: 5'- cGACUGaCCACCGAGGCA---GCCUCa -3' miRNA: 3'- uCUGAC-GGUGGCUCCGUucgUGGAGc -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 8665 | 0.78 | 0.129474 |
Target: 5'- cGGGCUGCCACgCG-GGCAacggGGCcGCCUCGa -3' miRNA: 3'- -UCUGACGGUG-GCuCCGU----UCG-UGGAGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 61838 | 0.77 | 0.140443 |
Target: 5'- --gUUGCUGCCaGGGGUGAGCACCUCGg -3' miRNA: 3'- ucuGACGGUGG-CUCCGUUCGUGGAGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 46069 | 0.75 | 0.188272 |
Target: 5'- -aGCUGCUcaagcaccGCCGGGGCGAGCgguGCCUCa -3' miRNA: 3'- ucUGACGG--------UGGCUCCGUUCG---UGGAGc -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 23353 | 0.75 | 0.193268 |
Target: 5'- gAGGCUGCCugCGAGGCcgccgAGGCAUggaUCGu -3' miRNA: 3'- -UCUGACGGugGCUCCG-----UUCGUGg--AGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 26140 | 0.75 | 0.203609 |
Target: 5'- cGAC-GCCGCCGAGGCcGAGCAgCC-CGa -3' miRNA: 3'- uCUGaCGGUGGCUCCG-UUCGU-GGaGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 13232 | 0.74 | 0.225734 |
Target: 5'- cGACcgGCCACCGugaGGGcCGAGCACC-CGg -3' miRNA: 3'- uCUGa-CGGUGGC---UCC-GUUCGUGGaGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 49581 | 0.74 | 0.225734 |
Target: 5'- cAGACcgGCgGgCGGGGUcAGCACCUCGa -3' miRNA: 3'- -UCUGa-CGgUgGCUCCGuUCGUGGAGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 1844 | 0.74 | 0.231574 |
Target: 5'- -cGCUGCCGCCGAGGCcgagaAAGcCGCCgccgCGu -3' miRNA: 3'- ucUGACGGUGGCUCCG-----UUC-GUGGa---GC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 63179 | 0.74 | 0.233946 |
Target: 5'- ----cGCCGCCGAGGUGAucgcaccccggucguGCGCCUCGa -3' miRNA: 3'- ucugaCGGUGGCUCCGUU---------------CGUGGAGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 46241 | 0.73 | 0.243638 |
Target: 5'- cGGCUGCCGCCuGAGGCAcGUcgACCcCGa -3' miRNA: 3'- uCUGACGGUGG-CUCCGUuCG--UGGaGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 40651 | 0.73 | 0.262708 |
Target: 5'- gAGAaagucaUGCuCGCCGAGcagcGCGAGCGCCUUGg -3' miRNA: 3'- -UCUg-----ACG-GUGGCUC----CGUUCGUGGAGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 37716 | 0.73 | 0.269329 |
Target: 5'- --cCUGCCAgacCCGAGGCAccgccgccgacgAGCugCUCGa -3' miRNA: 3'- ucuGACGGU---GGCUCCGU------------UCGugGAGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 47834 | 0.72 | 0.282973 |
Target: 5'- -cGCUGCCGCUGAcGGUgcgagcuuuucGAGCGCCUUGu -3' miRNA: 3'- ucUGACGGUGGCU-CCG-----------UUCGUGGAGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 36944 | 0.72 | 0.289998 |
Target: 5'- -uGCUGUCACCGGGGUgcccgcGAGacCGCCUCGg -3' miRNA: 3'- ucUGACGGUGGCUCCG------UUC--GUGGAGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 34110 | 0.71 | 0.32717 |
Target: 5'- gAGAacgUGUCGCCGGGcGCGAGCACgUCc -3' miRNA: 3'- -UCUg--ACGGUGGCUC-CGUUCGUGgAGc -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 46583 | 0.71 | 0.32717 |
Target: 5'- cGACcgcGCCGcCCGAGGCGagcAGCGCgUCGu -3' miRNA: 3'- uCUGa--CGGU-GGCUCCGU---UCGUGgAGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 38954 | 0.7 | 0.367757 |
Target: 5'- -cGCUGCCGCCGAGaGCcuGCACgaUGg -3' miRNA: 3'- ucUGACGGUGGCUC-CGuuCGUGgaGC- -5' |
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23386 | 3' | -57.8 | NC_005259.1 | + | 55852 | 0.7 | 0.384933 |
Target: 5'- uGGACUGa-ACCGuGGUgaacucgccGAGCGCCUCGc -3' miRNA: 3'- -UCUGACggUGGCuCCG---------UUCGUGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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