miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 3' -57.8 NC_005259.1 + 1240 0.67 0.549777
Target:  5'- cGGCUGCaagACCGGccucGGCAu-CACCUCGg -3'
miRNA:   3'- uCUGACGg--UGGCU----CCGUucGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 1844 0.74 0.231574
Target:  5'- -cGCUGCCGCCGAGGCcgagaAAGcCGCCgccgCGu -3'
miRNA:   3'- ucUGACGGUGGCUCCG-----UUC-GUGGa---GC- -5'
23386 3' -57.8 NC_005259.1 + 2008 0.69 0.468434
Target:  5'- -cGCgGCCAUCGGguGGCGcaccGGCACCUCa -3'
miRNA:   3'- ucUGaCGGUGGCU--CCGU----UCGUGGAGc -5'
23386 3' -57.8 NC_005259.1 + 5707 0.67 0.581463
Target:  5'- ---gUGCCGCCaAGGCcAGCGCCggaCGg -3'
miRNA:   3'- ucugACGGUGGcUCCGuUCGUGGa--GC- -5'
23386 3' -57.8 NC_005259.1 + 6950 0.66 0.63496
Target:  5'- -aGCUcGCCGCCGAcGGCAuccaCACcCUCGa -3'
miRNA:   3'- ucUGA-CGGUGGCU-CCGUuc--GUG-GAGC- -5'
23386 3' -57.8 NC_005259.1 + 8352 0.66 0.592115
Target:  5'- -cGCUGCUGCCGGuaucgcucGGCG-GCgGCCUCGg -3'
miRNA:   3'- ucUGACGGUGGCU--------CCGUuCG-UGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 8665 0.78 0.129474
Target:  5'- cGGGCUGCCACgCG-GGCAacggGGCcGCCUCGa -3'
miRNA:   3'- -UCUGACGGUG-GCuCCGU----UCG-UGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 8979 0.66 0.63496
Target:  5'- gGGACguaggUGCCAgCGGcgacGGCAGcCGCCUCGu -3'
miRNA:   3'- -UCUG-----ACGGUgGCU----CCGUUcGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 9528 0.67 0.559233
Target:  5'- cGACcGCCGCCG-GGUcaccggaGAGCugcccgGCCUCGa -3'
miRNA:   3'- uCUGaCGGUGGCuCCG-------UUCG------UGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 12070 0.66 0.63496
Target:  5'- cGGCaGaCACCGAGaUggGCACCUUGg -3'
miRNA:   3'- uCUGaCgGUGGCUCcGuuCGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 13232 0.74 0.225734
Target:  5'- cGACcgGCCACCGugaGGGcCGAGCACC-CGg -3'
miRNA:   3'- uCUGa-CGGUGGC---UCC-GUUCGUGGaGC- -5'
23386 3' -57.8 NC_005259.1 + 15147 0.67 0.581463
Target:  5'- gGGGCcaccucgGUgGCCGAGGCcgAGGCcauCCUCGa -3'
miRNA:   3'- -UCUGa------CGgUGGCUCCG--UUCGu--GGAGC- -5'
23386 3' -57.8 NC_005259.1 + 16611 0.78 0.112939
Target:  5'- cGGACUGUUcaacggGCCGAGGCAGGcCACCUaCGg -3'
miRNA:   3'- -UCUGACGG------UGGCUCCGUUC-GUGGA-GC- -5'
23386 3' -57.8 NC_005259.1 + 16647 0.68 0.508421
Target:  5'- cGAC-GCCGCCGAcaauuucggGGUGAcCGCCUCGa -3'
miRNA:   3'- uCUGaCGGUGGCU---------CCGUUcGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 17333 0.69 0.457721
Target:  5'- gGGugUGCCGgucaacgucgccgUCGAGGUcGGCGgCUCGg -3'
miRNA:   3'- -UCugACGGU-------------GGCUCCGuUCGUgGAGC- -5'
23386 3' -57.8 NC_005259.1 + 17982 0.69 0.427326
Target:  5'- cGGGCUGCgcauugggccgcuaCACCGAGGuCAAcGCACCg-- -3'
miRNA:   3'- -UCUGACG--------------GUGGCUCC-GUU-CGUGGagc -5'
23386 3' -57.8 NC_005259.1 + 18315 0.69 0.439531
Target:  5'- cGGugUGCgaCACCGAGGCcGGUGCgUUCGu -3'
miRNA:   3'- -UCugACG--GUGGCUCCGuUCGUG-GAGC- -5'
23386 3' -57.8 NC_005259.1 + 19715 0.69 0.42919
Target:  5'- uGGCUGCCGCCGAGGUgaucgacGGGgACUa-- -3'
miRNA:   3'- uCUGACGGUGGCUCCG-------UUCgUGGagc -5'
23386 3' -57.8 NC_005259.1 + 22995 0.69 0.439531
Target:  5'- cGAC-GCCGCCGAGGUcaccgAGGaCGgCUCGg -3'
miRNA:   3'- uCUGaCGGUGGCUCCG-----UUC-GUgGAGC- -5'
23386 3' -57.8 NC_005259.1 + 23353 0.75 0.193268
Target:  5'- gAGGCUGCCugCGAGGCcgccgAGGCAUggaUCGu -3'
miRNA:   3'- -UCUGACGGugGCUCCG-----UUCGUGg--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.