miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 3' -57.8 NC_005259.1 + 25080 0.67 0.570851
Target:  5'- -cGCUGCCACCGccGCu-GCGCC-CGc -3'
miRNA:   3'- ucUGACGGUGGCucCGuuCGUGGaGC- -5'
23386 3' -57.8 NC_005259.1 + 44746 0.67 0.570851
Target:  5'- cGACcG-CGCCGAGGCucuuGAGCACCg-- -3'
miRNA:   3'- uCUGaCgGUGGCUCCG----UUCGUGGagc -5'
23386 3' -57.8 NC_005259.1 + 38443 0.67 0.570851
Target:  5'- gAGACcgaaaaUGCCgugcgagggcACCGAgGGCAGaacaauuuGCACCUCGa -3'
miRNA:   3'- -UCUG------ACGG----------UGGCU-CCGUU--------CGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 37177 0.67 0.570851
Target:  5'- cGAC-GCCGCgCGAGGaCGAGCugCg-- -3'
miRNA:   3'- uCUGaCGGUG-GCUCC-GUUCGugGagc -5'
23386 3' -57.8 NC_005259.1 + 33591 0.67 0.560287
Target:  5'- -cGCggGCCACCGAGGCGcggucgAGCugCa-- -3'
miRNA:   3'- ucUGa-CGGUGGCUCCGU------UCGugGagc -5'
23386 3' -57.8 NC_005259.1 + 9528 0.67 0.559233
Target:  5'- cGACcGCCGCCG-GGUcaccggaGAGCugcccgGCCUCGa -3'
miRNA:   3'- uCUGaCGGUGGCuCCG-------UUCG------UGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 1240 0.67 0.549777
Target:  5'- cGGCUGCaagACCGGccucGGCAu-CACCUCGg -3'
miRNA:   3'- uCUGACGg--UGGCU----CCGUucGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 62946 0.67 0.549777
Target:  5'- -cGCUGCUGCCG-GGCAccGCuguCCUCGu -3'
miRNA:   3'- ucUGACGGUGGCuCCGUu-CGu--GGAGC- -5'
23386 3' -57.8 NC_005259.1 + 67982 0.67 0.53933
Target:  5'- cGGCgugGCCACCGccGCGAGCGucgacuugcCCUCc -3'
miRNA:   3'- uCUGa--CGGUGGCucCGUUCGU---------GGAGc -5'
23386 3' -57.8 NC_005259.1 + 29767 0.67 0.538288
Target:  5'- uGACUGaucagacCCA-CGAGGCAcccccGGUGCCUCGg -3'
miRNA:   3'- uCUGAC-------GGUgGCUCCGU-----UCGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 62603 0.67 0.536208
Target:  5'- gAGGCUGUgugagcugacgccgCACCGuGGCcAGCACCg-- -3'
miRNA:   3'- -UCUGACG--------------GUGGCuCCGuUCGUGGagc -5'
23386 3' -57.8 NC_005259.1 + 45319 0.67 0.527916
Target:  5'- gAGGCcGCCGCCGAacugcguGGCcuGCGCCg-- -3'
miRNA:   3'- -UCUGaCGGUGGCU-------CCGuuCGUGGagc -5'
23386 3' -57.8 NC_005259.1 + 55030 0.68 0.518645
Target:  5'- cGGCacggGCUGCCGAGGU--GCuuGCCUCGg -3'
miRNA:   3'- uCUGa---CGGUGGCUCCGuuCG--UGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 43736 0.68 0.518645
Target:  5'- cGGCcaUGCCGCCGAGcCGGGCAacaUCGg -3'
miRNA:   3'- uCUG--ACGGUGGCUCcGUUCGUgg-AGC- -5'
23386 3' -57.8 NC_005259.1 + 16647 0.68 0.508421
Target:  5'- cGAC-GCCGCCGAcaauuucggGGUGAcCGCCUCGa -3'
miRNA:   3'- uCUGaCGGUGGCU---------CCGUUcGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 63613 0.68 0.50537
Target:  5'- uGGCgGCCACCGacgccugauagaucAucguGGCGAGCugCUCGc -3'
miRNA:   3'- uCUGaCGGUGGC--------------U----CCGUUCGugGAGC- -5'
23386 3' -57.8 NC_005259.1 + 28009 0.68 0.498282
Target:  5'- gGGGCgggGUCGCCGGGGUugcGCGCgUUGg -3'
miRNA:   3'- -UCUGa--CGGUGGCUCCGuu-CGUGgAGC- -5'
23386 3' -57.8 NC_005259.1 + 64341 0.68 0.478284
Target:  5'- cGGACUGCCACuCGuuGCGGGCgguGCCcaUCa -3'
miRNA:   3'- -UCUGACGGUG-GCucCGUUCG---UGG--AGc -5'
23386 3' -57.8 NC_005259.1 + 64436 0.69 0.468434
Target:  5'- cGACgaGCUGCCGGGGCGcuGC-CCUUGg -3'
miRNA:   3'- uCUGa-CGGUGGCUCCGUu-CGuGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 2008 0.69 0.468434
Target:  5'- -cGCgGCCAUCGGguGGCGcaccGGCACCUCa -3'
miRNA:   3'- ucUGaCGGUGGCU--CCGU----UCGUGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.