miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 3' -57.8 NC_005259.1 + 37251 0.69 0.45869
Target:  5'- uGGCUGCCGCCGuugccAGGCuugAGGcCGCC-CGg -3'
miRNA:   3'- uCUGACGGUGGC-----UCCG---UUC-GUGGaGC- -5'
23386 3' -57.8 NC_005259.1 + 28070 0.69 0.457721
Target:  5'- --cCUGCCGCCacacgguGGGGU--GCACCUCGa -3'
miRNA:   3'- ucuGACGGUGG-------CUCCGuuCGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 17333 0.69 0.457721
Target:  5'- gGGugUGCCGgucaacgucgccgUCGAGGUcGGCGgCUCGg -3'
miRNA:   3'- -UCugACGGU-------------GGCUCCGuUCGUgGAGC- -5'
23386 3' -57.8 NC_005259.1 + 34697 0.69 0.449054
Target:  5'- cGGAUgaUGCCgaccaucuGCCGc-GCGAGCGCCUCGu -3'
miRNA:   3'- -UCUG--ACGG--------UGGCucCGUUCGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 34901 0.69 0.449054
Target:  5'- aGGACggGCCGCUcGGGCAucacacuGCuGCCUCGg -3'
miRNA:   3'- -UCUGa-CGGUGGcUCCGUu------CG-UGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 18315 0.69 0.439531
Target:  5'- cGGugUGCgaCACCGAGGCcGGUGCgUUCGu -3'
miRNA:   3'- -UCugACG--GUGGCUCCGuUCGUG-GAGC- -5'
23386 3' -57.8 NC_005259.1 + 22995 0.69 0.439531
Target:  5'- cGAC-GCCGCCGAGGUcaccgAGGaCGgCUCGg -3'
miRNA:   3'- uCUGaCGGUGGCUCCG-----UUC-GUgGAGC- -5'
23386 3' -57.8 NC_005259.1 + 19715 0.69 0.42919
Target:  5'- uGGCUGCCGCCGAGGUgaucgacGGGgACUa-- -3'
miRNA:   3'- uCUGACGGUGGCUCCG-------UUCgUGGagc -5'
23386 3' -57.8 NC_005259.1 + 17982 0.69 0.427326
Target:  5'- cGGGCUGCgcauugggccgcuaCACCGAGGuCAAcGCACCg-- -3'
miRNA:   3'- -UCUGACG--------------GUGGCUCC-GUU-CGUGGagc -5'
23386 3' -57.8 NC_005259.1 + 44991 0.7 0.415323
Target:  5'- cGACUGCCgaggcaccgccgaccGCCGGGGCc-GCGCCg-- -3'
miRNA:   3'- uCUGACGG---------------UGGCUCCGuuCGUGGagc -5'
23386 3' -57.8 NC_005259.1 + 42537 0.7 0.411672
Target:  5'- cGAUgGgCACCGAgguGGCGGGCAgCUCGg -3'
miRNA:   3'- uCUGaCgGUGGCU---CCGUUCGUgGAGC- -5'
23386 3' -57.8 NC_005259.1 + 44621 0.7 0.384933
Target:  5'- --gUUGCCGCCGuAGGUu-GCGCCUUGa -3'
miRNA:   3'- ucuGACGGUGGC-UCCGuuCGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 55852 0.7 0.384933
Target:  5'- uGGACUGa-ACCGuGGUgaacucgccGAGCGCCUCGc -3'
miRNA:   3'- -UCUGACggUGGCuCCG---------UUCGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 38954 0.7 0.367757
Target:  5'- -cGCUGCCGCCGAGaGCcuGCACgaUGg -3'
miRNA:   3'- ucUGACGGUGGCUC-CGuuCGUGgaGC- -5'
23386 3' -57.8 NC_005259.1 + 46583 0.71 0.32717
Target:  5'- cGACcgcGCCGcCCGAGGCGagcAGCGCgUCGu -3'
miRNA:   3'- uCUGa--CGGU-GGCUCCGU---UCGUGgAGC- -5'
23386 3' -57.8 NC_005259.1 + 34110 0.71 0.32717
Target:  5'- gAGAacgUGUCGCCGGGcGCGAGCACgUCc -3'
miRNA:   3'- -UCUg--ACGGUGGCUC-CGUUCGUGgAGc -5'
23386 3' -57.8 NC_005259.1 + 36944 0.72 0.289998
Target:  5'- -uGCUGUCACCGGGGUgcccgcGAGacCGCCUCGg -3'
miRNA:   3'- ucUGACGGUGGCUCCG------UUC--GUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 47834 0.72 0.282973
Target:  5'- -cGCUGCCGCUGAcGGUgcgagcuuuucGAGCGCCUUGu -3'
miRNA:   3'- ucUGACGGUGGCU-CCG-----------UUCGUGGAGC- -5'
23386 3' -57.8 NC_005259.1 + 37716 0.73 0.269329
Target:  5'- --cCUGCCAgacCCGAGGCAccgccgccgacgAGCugCUCGa -3'
miRNA:   3'- ucuGACGGU---GGCUCCGU------------UCGugGAGC- -5'
23386 3' -57.8 NC_005259.1 + 40651 0.73 0.262708
Target:  5'- gAGAaagucaUGCuCGCCGAGcagcGCGAGCGCCUUGg -3'
miRNA:   3'- -UCUg-----ACG-GUGGCUC----CGUUCGUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.