miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 5' -59 NC_005259.1 + 23370 0.72 0.295108
Target:  5'- cGCCGAGGCaugGAUCGUCAacAGCGGuaaacggcuGCCGAg -3'
miRNA:   3'- -CGGCUCUG---CUGGCGGU--UCGCU---------CGGCU- -5'
23386 5' -59 NC_005259.1 + 23871 0.67 0.540153
Target:  5'- aCCGAGugGaugcgcuauccGCUGCCGccCGAGCCGc -3'
miRNA:   3'- cGGCUCugC-----------UGGCGGUucGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 24862 0.74 0.20914
Target:  5'- cGCCGAGGCccgccucgcucuGACCGCUaucGAGUcAGCCGAg -3'
miRNA:   3'- -CGGCUCUG------------CUGGCGG---UUCGcUCGGCU- -5'
23386 5' -59 NC_005259.1 + 25418 0.7 0.363638
Target:  5'- aCCGGGACGGCgagGUCGAggaauGCGAGCCGu -3'
miRNA:   3'- cGGCUCUGCUGg--CGGUU-----CGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 25544 0.71 0.316776
Target:  5'- uGCUGGGACgGAUCGUCAAGgGugucaagaAGCCGAa -3'
miRNA:   3'- -CGGCUCUG-CUGGCGGUUCgC--------UCGGCU- -5'
23386 5' -59 NC_005259.1 + 25902 0.69 0.442436
Target:  5'- uCCGAgGAUGGCCGCC---UGAGCCGc -3'
miRNA:   3'- cGGCU-CUGCUGGCGGuucGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 26017 0.72 0.268037
Target:  5'- -gCGGGAUGGCCG-CAAGCGGGuuGGc -3'
miRNA:   3'- cgGCUCUGCUGGCgGUUCGCUCggCU- -5'
23386 5' -59 NC_005259.1 + 26095 0.71 0.339622
Target:  5'- cGCCGAGAaGACCcCCGAGCaGAccGCCGc -3'
miRNA:   3'- -CGGCUCUgCUGGcGGUUCG-CU--CGGCu -5'
23386 5' -59 NC_005259.1 + 26132 0.69 0.424091
Target:  5'- cGCCGGuccGACG-CCGCCGAGgcCGAGCagccCGAa -3'
miRNA:   3'- -CGGCU---CUGCuGGCGGUUC--GCUCG----GCU- -5'
23386 5' -59 NC_005259.1 + 26425 0.81 0.076353
Target:  5'- cGCCGuAGaACGcACCGCCGAGCGGGCgGGc -3'
miRNA:   3'- -CGGC-UC-UGC-UGGCGGUUCGCUCGgCU- -5'
23386 5' -59 NC_005259.1 + 26498 0.66 0.623128
Target:  5'- cGCCGcGAgcuCG-CCGCCcGGCGAGaaGAg -3'
miRNA:   3'- -CGGCuCU---GCuGGCGGuUCGCUCggCU- -5'
23386 5' -59 NC_005259.1 + 26558 0.67 0.550368
Target:  5'- aCCGAGGCuguaGCCGCCGAGCacgaacuuGCgCGAg -3'
miRNA:   3'- cGGCUCUGc---UGGCGGUUCGcu------CG-GCU- -5'
23386 5' -59 NC_005259.1 + 26834 0.73 0.249076
Target:  5'- uGCCGGGGCGGuCUGCuCGGGCagGAuGCCGAg -3'
miRNA:   3'- -CGGCUCUGCU-GGCG-GUUCG--CU-CGGCU- -5'
23386 5' -59 NC_005259.1 + 27081 0.74 0.219952
Target:  5'- cGCCGAcauucugcGGCGGCUGCCAugcGGUGGGCUGu -3'
miRNA:   3'- -CGGCU--------CUGCUGGCGGU---UCGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 27189 0.67 0.549344
Target:  5'- gGCUGcGACGcuggaacucccgcACCGCgAgcucggugAGCGGGCCGAa -3'
miRNA:   3'- -CGGCuCUGC-------------UGGCGgU--------UCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 28005 0.67 0.547297
Target:  5'- uGCCGGGGCGGggUCGCCGggguugcgcgcguuGGCcAGCCa- -3'
miRNA:   3'- -CGGCUCUGCU--GGCGGU--------------UCGcUCGGcu -5'
23386 5' -59 NC_005259.1 + 28654 0.68 0.499012
Target:  5'- cGCCGAGGCcGCCGUCAAGaucaugaCGuGGCuCGAa -3'
miRNA:   3'- -CGGCUCUGcUGGCGGUUC-------GC-UCG-GCU- -5'
23386 5' -59 NC_005259.1 + 29679 0.66 0.612649
Target:  5'- uGCCG-GACGcGCCGCaauCGAGacCGAuGCCGAg -3'
miRNA:   3'- -CGGCuCUGC-UGGCG---GUUC--GCU-CGGCU- -5'
23386 5' -59 NC_005259.1 + 29811 0.7 0.363638
Target:  5'- aGUCGAGACGAggUCGCUAAGCGccucGGCaUGAa -3'
miRNA:   3'- -CGGCUCUGCU--GGCGGUUCGC----UCG-GCU- -5'
23386 5' -59 NC_005259.1 + 29919 0.71 0.347498
Target:  5'- cCCGAGACcaucgacgcguGGCCGCCAcGCGGcCCGGu -3'
miRNA:   3'- cGGCUCUG-----------CUGGCGGUuCGCUcGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.