miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 5' -59 NC_005259.1 + 13432 0.69 0.424091
Target:  5'- cGCCGGGGCcgcgcuaggcguGACCGUCGGcGCGGcGCUGGu -3'
miRNA:   3'- -CGGCUCUG------------CUGGCGGUU-CGCU-CGGCU- -5'
23386 5' -59 NC_005259.1 + 13734 0.66 0.581337
Target:  5'- uGCCGuGAUGGCCcgcgagauauGCCAAGaccucGCCGAc -3'
miRNA:   3'- -CGGCuCUGCUGG----------CGGUUCgcu--CGGCU- -5'
23386 5' -59 NC_005259.1 + 13929 0.66 0.591746
Target:  5'- aCCGAaccAUGACCGCCAAauCGAcGCCGGa -3'
miRNA:   3'- cGGCUc--UGCUGGCGGUUc-GCU-CGGCU- -5'
23386 5' -59 NC_005259.1 + 14161 0.67 0.530004
Target:  5'- cGUCGuGugGAucUCGCCGGGCGGGUgGc -3'
miRNA:   3'- -CGGCuCugCU--GGCGGUUCGCUCGgCu -5'
23386 5' -59 NC_005259.1 + 14317 0.7 0.371901
Target:  5'- gGCCGcccucGACGccGCCGCCcgcguGCGGGCCGc -3'
miRNA:   3'- -CGGCu----CUGC--UGGCGGuu---CGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 14544 0.71 0.339622
Target:  5'- uGCCGAGuucgucCGGCagGCCGAGCGGGgaCCGGc -3'
miRNA:   3'- -CGGCUCu-----GCUGg-CGGUUCGCUC--GGCU- -5'
23386 5' -59 NC_005259.1 + 14736 0.73 0.231237
Target:  5'- cGCCGAGAUGuACgCGCUGGcCGGGCCGGu -3'
miRNA:   3'- -CGGCUCUGC-UG-GCGGUUcGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 15797 0.7 0.371901
Target:  5'- cGCCGGGAuCGACCGCCcgacauccaAGGUggugcuucuGAGCuCGAu -3'
miRNA:   3'- -CGGCUCU-GCUGGCGG---------UUCG---------CUCG-GCU- -5'
23386 5' -59 NC_005259.1 + 16180 0.66 0.568898
Target:  5'- cGCCGAGGuccaaGAgaucauguccaccCCGCCugaguuccugaucAGGUGGGCCGAa -3'
miRNA:   3'- -CGGCUCUg----CU-------------GGCGG-------------UUCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 16420 0.68 0.490164
Target:  5'- aCCGAGGUGcCCGUCGAGCG-GCCc- -3'
miRNA:   3'- cGGCUCUGCuGGCGGUUCGCuCGGcu -5'
23386 5' -59 NC_005259.1 + 16472 0.69 0.441509
Target:  5'- cGCCGcAGAUcGCCGUCAagGGCGcacccgcgcgcauGGCCGAg -3'
miRNA:   3'- -CGGC-UCUGcUGGCGGU--UCGC-------------UCGGCU- -5'
23386 5' -59 NC_005259.1 + 16625 0.72 0.281314
Target:  5'- gGCCGAGGCaGGCCaCCuacGGCGAcgccGCCGAc -3'
miRNA:   3'- -CGGCUCUG-CUGGcGGu--UCGCU----CGGCU- -5'
23386 5' -59 NC_005259.1 + 16702 0.77 0.131042
Target:  5'- aCCGAGGUGACCGCCGAGCaGGUCGc -3'
miRNA:   3'- cGGCUCUGCUGGCGGUUCGcUCGGCu -5'
23386 5' -59 NC_005259.1 + 17755 0.7 0.397446
Target:  5'- uCCGuGA-GGCCGCCGcGCGccgGGCCGAg -3'
miRNA:   3'- cGGCuCUgCUGGCGGUuCGC---UCGGCU- -5'
23386 5' -59 NC_005259.1 + 17787 0.68 0.461222
Target:  5'- aCCGAGcguGCGcACCGCgAuAGCGAgGCCGGu -3'
miRNA:   3'- cGGCUC---UGC-UGGCGgU-UCGCU-CGGCU- -5'
23386 5' -59 NC_005259.1 + 17827 0.68 0.470771
Target:  5'- -gCGAGGCcAUCGaCGGGUGGGCCGAg -3'
miRNA:   3'- cgGCUCUGcUGGCgGUUCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 18275 0.69 0.442436
Target:  5'- cCUGAGACGACCucgacGCCcgaCGAGCCGc -3'
miRNA:   3'- cGGCUCUGCUGG-----CGGuucGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 19234 0.67 0.549344
Target:  5'- aCCGAgucggcgaugaucGAUGGCCGCCugcCGGGCCGc -3'
miRNA:   3'- cGGCU-------------CUGCUGGCGGuucGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 21647 0.68 0.499999
Target:  5'- cGCCGAGGCucUCGCgGAGau-GCCGAu -3'
miRNA:   3'- -CGGCUCUGcuGGCGgUUCgcuCGGCU- -5'
23386 5' -59 NC_005259.1 + 23041 0.68 0.499999
Target:  5'- cCCGAcGACGAgCUGCCcGGCGAGggaagcgacCCGAc -3'
miRNA:   3'- cGGCU-CUGCU-GGCGGuUCGCUC---------GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.