miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 5' -59 NC_005259.1 + 778 0.8 0.086104
Target:  5'- cGCCGAGGCGGCUgcccucgguugggugGCCAAG-GGGCCGGg -3'
miRNA:   3'- -CGGCUCUGCUGG---------------CGGUUCgCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 1856 0.71 0.347498
Target:  5'- gGCCGAGAaaGCCGCCGccgcguuccguaAGCaGGCCGc -3'
miRNA:   3'- -CGGCUCUgcUGGCGGU------------UCGcUCGGCu -5'
23386 5' -59 NC_005259.1 + 1892 0.68 0.48042
Target:  5'- nGCCGAGaucgcGCGAgCUGCCGaggaAGCGcGCCGc -3'
miRNA:   3'- -CGGCUC-----UGCU-GGCGGU----UCGCuCGGCu -5'
23386 5' -59 NC_005259.1 + 2743 0.66 0.567864
Target:  5'- uGCCGAGGuCG-CCGUCGugcAGUacgaccaccuccccGAGCCGAc -3'
miRNA:   3'- -CGGCUCU-GCuGGCGGU---UCG--------------CUCGGCU- -5'
23386 5' -59 NC_005259.1 + 3053 0.69 0.442436
Target:  5'- cGCCGAcuACuACCGUCGA-CGGGCCGAg -3'
miRNA:   3'- -CGGCUc-UGcUGGCGGUUcGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 4433 0.69 0.41509
Target:  5'- cCCGAGGuCGAgCCGCCcguGCGAGUgGGc -3'
miRNA:   3'- cGGCUCU-GCU-GGCGGuu-CGCUCGgCU- -5'
23386 5' -59 NC_005259.1 + 5723 0.76 0.167749
Target:  5'- cGCCG-GACGGCgGCCAuucucgcggccaagcGGCGAGCUGc -3'
miRNA:   3'- -CGGCuCUGCUGgCGGU---------------UCGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 6115 0.75 0.179423
Target:  5'- gGCCGAGGCcGCCGCUAcGCGGGCa-- -3'
miRNA:   3'- -CGGCUCUGcUGGCGGUuCGCUCGgcu -5'
23386 5' -59 NC_005259.1 + 6227 0.68 0.48042
Target:  5'- cGCCGAcACcguGACCGUgggCGAGUGGGUCGAu -3'
miRNA:   3'- -CGGCUcUG---CUGGCG---GUUCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 7645 0.74 0.219952
Target:  5'- cGCCGAGuuCGACCGCCGucgucGUGAGCg-- -3'
miRNA:   3'- -CGGCUCu-GCUGGCGGUu----CGCUCGgcu -5'
23386 5' -59 NC_005259.1 + 8358 0.71 0.312348
Target:  5'- uGCCGGuaucgcucggcGGCGGCCucggcaucggcgagaGCCucGGCGAGCCGGg -3'
miRNA:   3'- -CGGCU-----------CUGCUGG---------------CGGu-UCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 8649 0.66 0.623128
Target:  5'- gGCaCGAGGCuguggucgGGCUGCCAcGCGGGCaaCGGg -3'
miRNA:   3'- -CG-GCUCUG--------CUGGCGGUuCGCUCG--GCU- -5'
23386 5' -59 NC_005259.1 + 8704 0.66 0.623128
Target:  5'- uGUCGAGGuCGucGCgGUCAAGCGuGUCGGu -3'
miRNA:   3'- -CGGCUCU-GC--UGgCGGUUCGCuCGGCU- -5'
23386 5' -59 NC_005259.1 + 8975 0.68 0.461222
Target:  5'- uGCCGGGACGuaGgUGCCAgcGGCGAcggcaGCCGc -3'
miRNA:   3'- -CGGCUCUGC--UgGCGGU--UCGCU-----CGGCu -5'
23386 5' -59 NC_005259.1 + 9156 0.66 0.612649
Target:  5'- cCCGucGACGGCaUGCCGguGGC-AGCCGAu -3'
miRNA:   3'- cGGCu-CUGCUG-GCGGU--UCGcUCGGCU- -5'
23386 5' -59 NC_005259.1 + 10241 0.67 0.540153
Target:  5'- aCUGAGcACGGCggugUGCUugauGAGCGGGCCGGu -3'
miRNA:   3'- cGGCUC-UGCUG----GCGG----UUCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 10753 0.67 0.550368
Target:  5'- uGCCG-GGCGAUCaucauGUCGGGCGGGUCa- -3'
miRNA:   3'- -CGGCuCUGCUGG-----CGGUUCGCUCGGcu -5'
23386 5' -59 NC_005259.1 + 11022 0.7 0.369409
Target:  5'- cGCCGAGGCaGGaguUCGCCGGGUGGucaccgcaugacguGCCGAu -3'
miRNA:   3'- -CGGCUCUG-CU---GGCGGUUCGCU--------------CGGCU- -5'
23386 5' -59 NC_005259.1 + 11314 0.66 0.602186
Target:  5'- gGCCGAGACGGgCGCgcAGCucGUCGu -3'
miRNA:   3'- -CGGCUCUGCUgGCGguUCGcuCGGCu -5'
23386 5' -59 NC_005259.1 + 12512 0.7 0.371901
Target:  5'- cGCUGGGccgcuCGGCUacccguagaGCCGAGCGAGCCc- -3'
miRNA:   3'- -CGGCUCu----GCUGG---------CGGUUCGCUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.