miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 5' -59 NC_005259.1 + 26498 0.66 0.623128
Target:  5'- cGCCGcGAgcuCG-CCGCCcGGCGAGaaGAg -3'
miRNA:   3'- -CGGCuCU---GCuGGCGGuUCGCUCggCU- -5'
23386 5' -59 NC_005259.1 + 14736 0.73 0.231237
Target:  5'- cGCCGAGAUGuACgCGCUGGcCGGGCCGGu -3'
miRNA:   3'- -CGGCUCUGC-UG-GCGGUUcGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 36444 0.73 0.23706
Target:  5'- cGCCGAGGuCGACCGCgucgaGGGUGAGCa-- -3'
miRNA:   3'- -CGGCUCU-GCUGGCGg----UUCGCUCGgcu -5'
23386 5' -59 NC_005259.1 + 26834 0.73 0.249076
Target:  5'- uGCCGGGGCGGuCUGCuCGGGCagGAuGCCGAg -3'
miRNA:   3'- -CGGCUCUGCU-GGCG-GUUCG--CU-CGGCU- -5'
23386 5' -59 NC_005259.1 + 26017 0.72 0.268037
Target:  5'- -gCGGGAUGGCCG-CAAGCGGGuuGGc -3'
miRNA:   3'- cgGCUCUGCUGGCgGUUCGCUCggCU- -5'
23386 5' -59 NC_005259.1 + 45522 0.72 0.274611
Target:  5'- cGCCGGuGuuGGCCGCCGuggcuGCGAGCgGGu -3'
miRNA:   3'- -CGGCU-CugCUGGCGGUu----CGCUCGgCU- -5'
23386 5' -59 NC_005259.1 + 16625 0.72 0.281314
Target:  5'- gGCCGAGGCaGGCCaCCuacGGCGAcgccGCCGAc -3'
miRNA:   3'- -CGGCUCUG-CUGGcGGu--UCGCU----CGGCU- -5'
23386 5' -59 NC_005259.1 + 45394 0.72 0.281314
Target:  5'- cUCGGGGuCG-CCGCCGAGCGcGCUGAu -3'
miRNA:   3'- cGGCUCU-GCuGGCGGUUCGCuCGGCU- -5'
23386 5' -59 NC_005259.1 + 23370 0.72 0.295108
Target:  5'- cGCCGAGGCaugGAUCGUCAacAGCGGuaaacggcuGCCGAg -3'
miRNA:   3'- -CGGCUCUG---CUGGCGGU--UCGCU---------CGGCU- -5'
23386 5' -59 NC_005259.1 + 27081 0.74 0.219952
Target:  5'- cGCCGAcauucugcGGCGGCUGCCAugcGGUGGGCUGu -3'
miRNA:   3'- -CGGCU--------CUGCUGGCGGU---UCGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 7645 0.74 0.219952
Target:  5'- cGCCGAGuuCGACCGCCGucgucGUGAGCg-- -3'
miRNA:   3'- -CGGCUCu-GCUGGCGGUu----CGCUCGgcu -5'
23386 5' -59 NC_005259.1 + 24862 0.74 0.20914
Target:  5'- cGCCGAGGCccgccucgcucuGACCGCUaucGAGUcAGCCGAg -3'
miRNA:   3'- -CGGCUCUG------------CUGGCGG---UUCGcUCGGCU- -5'
23386 5' -59 NC_005259.1 + 778 0.8 0.086104
Target:  5'- cGCCGAGGCGGCUgcccucgguugggugGCCAAG-GGGCCGGg -3'
miRNA:   3'- -CGGCUCUGCUGG---------------CGGUUCgCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 16702 0.77 0.131042
Target:  5'- aCCGAGGUGACCGCCGAGCaGGUCGc -3'
miRNA:   3'- cGGCUCUGCUGGCGGUUCGcUCGGCu -5'
23386 5' -59 NC_005259.1 + 45315 0.76 0.161749
Target:  5'- cGCCGAGGCcGCCGCCGAacuGCGuGGCCu- -3'
miRNA:   3'- -CGGCUCUGcUGGCGGUU---CGC-UCGGcu -5'
23386 5' -59 NC_005259.1 + 47017 0.76 0.166015
Target:  5'- aGCCGAccACGACCGCCuccAGCaGGCCGGg -3'
miRNA:   3'- -CGGCUc-UGCUGGCGGu--UCGcUCGGCU- -5'
23386 5' -59 NC_005259.1 + 5723 0.76 0.167749
Target:  5'- cGCCG-GACGGCgGCCAuucucgcggccaagcGGCGAGCUGc -3'
miRNA:   3'- -CGGCuCUGCUGgCGGU---------------UCGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 6115 0.75 0.179423
Target:  5'- gGCCGAGGCcGCCGCUAcGCGGGCa-- -3'
miRNA:   3'- -CGGCUCUGcUGGCGGUuCGCUCGgcu -5'
23386 5' -59 NC_005259.1 + 43034 0.75 0.184102
Target:  5'- cGCCGAG-CaGGCCGCCGagcAGCGAaCCGAc -3'
miRNA:   3'- -CGGCUCuG-CUGGCGGU---UCGCUcGGCU- -5'
23386 5' -59 NC_005259.1 + 44995 0.74 0.198789
Target:  5'- uGCCGAGGC-ACCGCCGAccGCcgGGGCCGc -3'
miRNA:   3'- -CGGCUCUGcUGGCGGUU--CG--CUCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.