Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23386 | 5' | -59 | NC_005259.1 | + | 26425 | 0.81 | 0.076353 |
Target: 5'- cGCCGuAGaACGcACCGCCGAGCGGGCgGGc -3' miRNA: 3'- -CGGC-UC-UGC-UGGCGGUUCGCUCGgCU- -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 778 | 0.8 | 0.086104 |
Target: 5'- cGCCGAGGCGGCUgcccucgguugggugGCCAAG-GGGCCGGg -3' miRNA: 3'- -CGGCUCUGCUGG---------------CGGUUCgCUCGGCU- -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 16702 | 0.77 | 0.131042 |
Target: 5'- aCCGAGGUGACCGCCGAGCaGGUCGc -3' miRNA: 3'- cGGCUCUGCUGGCGGUUCGcUCGGCu -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 45315 | 0.76 | 0.161749 |
Target: 5'- cGCCGAGGCcGCCGCCGAacuGCGuGGCCu- -3' miRNA: 3'- -CGGCUCUGcUGGCGGUU---CGC-UCGGcu -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 47017 | 0.76 | 0.166015 |
Target: 5'- aGCCGAccACGACCGCCuccAGCaGGCCGGg -3' miRNA: 3'- -CGGCUc-UGCUGGCGGu--UCGcUCGGCU- -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 5723 | 0.76 | 0.167749 |
Target: 5'- cGCCG-GACGGCgGCCAuucucgcggccaagcGGCGAGCUGc -3' miRNA: 3'- -CGGCuCUGCUGgCGGU---------------UCGCUCGGCu -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 6115 | 0.75 | 0.179423 |
Target: 5'- gGCCGAGGCcGCCGCUAcGCGGGCa-- -3' miRNA: 3'- -CGGCUCUGcUGGCGGUuCGCUCGgcu -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 43034 | 0.75 | 0.184102 |
Target: 5'- cGCCGAG-CaGGCCGCCGagcAGCGAaCCGAc -3' miRNA: 3'- -CGGCUCuG-CUGGCGGU---UCGCUcGGCU- -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 44995 | 0.74 | 0.198789 |
Target: 5'- uGCCGAGGC-ACCGCCGAccGCcgGGGCCGc -3' miRNA: 3'- -CGGCUCUGcUGGCGGUU--CG--CUCGGCu -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 24862 | 0.74 | 0.20914 |
Target: 5'- cGCCGAGGCccgccucgcucuGACCGCUaucGAGUcAGCCGAg -3' miRNA: 3'- -CGGCUCUG------------CUGGCGG---UUCGcUCGGCU- -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 27081 | 0.74 | 0.219952 |
Target: 5'- cGCCGAcauucugcGGCGGCUGCCAugcGGUGGGCUGu -3' miRNA: 3'- -CGGCU--------CUGCUGGCGGU---UCGCUCGGCu -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 7645 | 0.74 | 0.219952 |
Target: 5'- cGCCGAGuuCGACCGCCGucgucGUGAGCg-- -3' miRNA: 3'- -CGGCUCu-GCUGGCGGUu----CGCUCGgcu -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 14736 | 0.73 | 0.231237 |
Target: 5'- cGCCGAGAUGuACgCGCUGGcCGGGCCGGu -3' miRNA: 3'- -CGGCUCUGC-UG-GCGGUUcGCUCGGCU- -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 36444 | 0.73 | 0.23706 |
Target: 5'- cGCCGAGGuCGACCGCgucgaGGGUGAGCa-- -3' miRNA: 3'- -CGGCUCU-GCUGGCGg----UUCGCUCGgcu -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 26834 | 0.73 | 0.249076 |
Target: 5'- uGCCGGGGCGGuCUGCuCGGGCagGAuGCCGAg -3' miRNA: 3'- -CGGCUCUGCU-GGCG-GUUCG--CU-CGGCU- -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 26017 | 0.72 | 0.268037 |
Target: 5'- -gCGGGAUGGCCG-CAAGCGGGuuGGc -3' miRNA: 3'- cgGCUCUGCUGGCgGUUCGCUCggCU- -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 45522 | 0.72 | 0.274611 |
Target: 5'- cGCCGGuGuuGGCCGCCGuggcuGCGAGCgGGu -3' miRNA: 3'- -CGGCU-CugCUGGCGGUu----CGCUCGgCU- -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 16625 | 0.72 | 0.281314 |
Target: 5'- gGCCGAGGCaGGCCaCCuacGGCGAcgccGCCGAc -3' miRNA: 3'- -CGGCUCUG-CUGGcGGu--UCGCU----CGGCU- -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 45394 | 0.72 | 0.281314 |
Target: 5'- cUCGGGGuCG-CCGCCGAGCGcGCUGAu -3' miRNA: 3'- cGGCUCU-GCuGGCGGUUCGCuCGGCU- -5' |
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23386 | 5' | -59 | NC_005259.1 | + | 23370 | 0.72 | 0.295108 |
Target: 5'- cGCCGAGGCaugGAUCGUCAacAGCGGuaaacggcuGCCGAg -3' miRNA: 3'- -CGGCUCUG---CUGGCGGU--UCGCU---------CGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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