miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 5' -59 NC_005259.1 + 8358 0.71 0.312348
Target:  5'- uGCCGGuaucgcucggcGGCGGCCucggcaucggcgagaGCCucGGCGAGCCGGg -3'
miRNA:   3'- -CGGCU-----------CUGCUGG---------------CGGu-UCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 25544 0.71 0.316776
Target:  5'- uGCUGGGACgGAUCGUCAAGgGugucaagaAGCCGAa -3'
miRNA:   3'- -CGGCUCUG-CUGGCGGUUCgC--------UCGGCU- -5'
23386 5' -59 NC_005259.1 + 35887 0.71 0.316776
Target:  5'- cGCCGAGGCaGACCaC--GGCGAGCCa- -3'
miRNA:   3'- -CGGCUCUG-CUGGcGguUCGCUCGGcu -5'
23386 5' -59 NC_005259.1 + 37725 0.71 0.32426
Target:  5'- cCCGAGGCaccGCCGCCGA-CGAGCUGc -3'
miRNA:   3'- cGGCUCUGc--UGGCGGUUcGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 51958 0.71 0.331876
Target:  5'- cGCCGAGAgaggaagccaUGACCGCCAGaaucaucacCGAcGCCGAu -3'
miRNA:   3'- -CGGCUCU----------GCUGGCGGUUc--------GCU-CGGCU- -5'
23386 5' -59 NC_005259.1 + 26095 0.71 0.339622
Target:  5'- cGCCGAGAaGACCcCCGAGCaGAccGCCGc -3'
miRNA:   3'- -CGGCUCUgCUGGcGGUUCG-CU--CGGCu -5'
23386 5' -59 NC_005259.1 + 14544 0.71 0.339622
Target:  5'- uGCCGAGuucgucCGGCagGCCGAGCGGGgaCCGGc -3'
miRNA:   3'- -CGGCUCu-----GCUGg-CGGUUCGCUC--GGCU- -5'
23386 5' -59 NC_005259.1 + 1856 0.71 0.347498
Target:  5'- gGCCGAGAaaGCCGCCGccgcguuccguaAGCaGGCCGc -3'
miRNA:   3'- -CGGCUCUgcUGGCGGU------------UCGcUCGGCu -5'
23386 5' -59 NC_005259.1 + 43727 0.71 0.347498
Target:  5'- aGUCGAuGGCGGCCauGCCGc-CGAGCCGGg -3'
miRNA:   3'- -CGGCU-CUGCUGG--CGGUucGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 60073 0.71 0.347498
Target:  5'- gGCUcGGGCGGCuCGCCGacuuucucgauGGCGAGCuCGAc -3'
miRNA:   3'- -CGGcUCUGCUG-GCGGU-----------UCGCUCG-GCU- -5'
23386 5' -59 NC_005259.1 + 29919 0.71 0.347498
Target:  5'- cCCGAGACcaucgacgcguGGCCGCCAcGCGGcCCGGu -3'
miRNA:   3'- cGGCUCUG-----------CUGGCGGUuCGCUcGGCU- -5'
23386 5' -59 NC_005259.1 + 56884 0.7 0.355503
Target:  5'- -aUGAGcCGACCGCCAaucgcAGCGuGGCCGc -3'
miRNA:   3'- cgGCUCuGCUGGCGGU-----UCGC-UCGGCu -5'
23386 5' -59 NC_005259.1 + 46909 0.7 0.355503
Target:  5'- cGCCGAGcaguccGCGugcGCCGCCGAGCuuGCCc- -3'
miRNA:   3'- -CGGCUC------UGC---UGGCGGUUCGcuCGGcu -5'
23386 5' -59 NC_005259.1 + 25418 0.7 0.363638
Target:  5'- aCCGGGACGGCgagGUCGAggaauGCGAGCCGu -3'
miRNA:   3'- cGGCUCUGCUGg--CGGUU-----CGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 29811 0.7 0.363638
Target:  5'- aGUCGAGACGAggUCGCUAAGCGccucGGCaUGAa -3'
miRNA:   3'- -CGGCUCUGCU--GGCGGUUCGC----UCG-GCU- -5'
23386 5' -59 NC_005259.1 + 65973 0.7 0.363638
Target:  5'- uCCGAGAUcacaGGCgCGCCGAGC-AGCCGc -3'
miRNA:   3'- cGGCUCUG----CUG-GCGGUUCGcUCGGCu -5'
23386 5' -59 NC_005259.1 + 11022 0.7 0.369409
Target:  5'- cGCCGAGGCaGGaguUCGCCGGGUGGucaccgcaugacguGCCGAu -3'
miRNA:   3'- -CGGCUCUG-CU---GGCGGUUCGCU--------------CGGCU- -5'
23386 5' -59 NC_005259.1 + 12512 0.7 0.371901
Target:  5'- cGCUGGGccgcuCGGCUacccguagaGCCGAGCGAGCCc- -3'
miRNA:   3'- -CGGCUCu----GCUGG---------CGGUUCGCUCGGcu -5'
23386 5' -59 NC_005259.1 + 14317 0.7 0.371901
Target:  5'- gGCCGcccucGACGccGCCGCCcgcguGCGGGCCGc -3'
miRNA:   3'- -CGGCu----CUGC--UGGCGGuu---CGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 15797 0.7 0.371901
Target:  5'- cGCCGGGAuCGACCGCCcgacauccaAGGUggugcuucuGAGCuCGAu -3'
miRNA:   3'- -CGGCUCU-GCUGGCGG---------UUCG---------CUCG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.