miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 5' -59 NC_005259.1 + 2743 0.66 0.567864
Target:  5'- uGCCGAGGuCG-CCGUCGugcAGUacgaccaccuccccGAGCCGAc -3'
miRNA:   3'- -CGGCUCU-GCuGGCGGU---UCG--------------CUCGGCU- -5'
23386 5' -59 NC_005259.1 + 44462 0.67 0.560641
Target:  5'- aCCGGGGauGCCGCCGcccuGGCcGGGCCa- -3'
miRNA:   3'- cGGCUCUgcUGGCGGU----UCG-CUCGGcu -5'
23386 5' -59 NC_005259.1 + 63160 0.67 0.560641
Target:  5'- cGuuGAG-CaGCCGCCGcAGCGccGCCGAg -3'
miRNA:   3'- -CggCUCuGcUGGCGGU-UCGCu-CGGCU- -5'
23386 5' -59 NC_005259.1 + 58170 0.67 0.554471
Target:  5'- cGCaCGGGAucucgacgcacgucuUGACCGCCGugGGCuuGCCGGu -3'
miRNA:   3'- -CG-GCUCU---------------GCUGGCGGU--UCGcuCGGCU- -5'
23386 5' -59 NC_005259.1 + 46993 0.67 0.550368
Target:  5'- gGCCGAGG-GugCGCCAcGCGAGg--- -3'
miRNA:   3'- -CGGCUCUgCugGCGGUuCGCUCggcu -5'
23386 5' -59 NC_005259.1 + 26558 0.67 0.550368
Target:  5'- aCCGAGGCuguaGCCGCCGAGCacgaacuuGCgCGAg -3'
miRNA:   3'- cGGCUCUGc---UGGCGGUUCGcu------CG-GCU- -5'
23386 5' -59 NC_005259.1 + 10753 0.67 0.550368
Target:  5'- uGCCG-GGCGAUCaucauGUCGGGCGGGUCa- -3'
miRNA:   3'- -CGGCuCUGCUGG-----CGGUUCGCUCGGcu -5'
23386 5' -59 NC_005259.1 + 61036 0.67 0.550368
Target:  5'- cGgCGAGGuCGACCGaCGGGCGGcucaccuuguGCCGGg -3'
miRNA:   3'- -CgGCUCU-GCUGGCgGUUCGCU----------CGGCU- -5'
23386 5' -59 NC_005259.1 + 27189 0.67 0.549344
Target:  5'- gGCUGcGACGcuggaacucccgcACCGCgAgcucggugAGCGGGCCGAa -3'
miRNA:   3'- -CGGCuCUGC-------------UGGCGgU--------UCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 19234 0.67 0.549344
Target:  5'- aCCGAgucggcgaugaucGAUGGCCGCCugcCGGGCCGc -3'
miRNA:   3'- cGGCU-------------CUGCUGGCGGuucGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 28005 0.67 0.547297
Target:  5'- uGCCGGGGCGGggUCGCCGggguugcgcgcguuGGCcAGCCa- -3'
miRNA:   3'- -CGGCUCUGCU--GGCGGU--------------UCGcUCGGcu -5'
23386 5' -59 NC_005259.1 + 10241 0.67 0.540153
Target:  5'- aCUGAGcACGGCggugUGCUugauGAGCGGGCCGGu -3'
miRNA:   3'- cGGCUC-UGCUG----GCGG----UUCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 23871 0.67 0.540153
Target:  5'- aCCGAGugGaugcgcuauccGCUGCCGccCGAGCCGc -3'
miRNA:   3'- cGGCUCugC-----------UGGCGGUucGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 55102 0.67 0.534055
Target:  5'- uGCCGAuggcGGCGaaaaaugcaccggcuGCCguGCCGAGCaGGCCGAc -3'
miRNA:   3'- -CGGCU----CUGC---------------UGG--CGGUUCGcUCGGCU- -5'
23386 5' -59 NC_005259.1 + 30720 0.67 0.530004
Target:  5'- cGCCGAcGCG-CCGCaCGAGCGAuacCUGAg -3'
miRNA:   3'- -CGGCUcUGCuGGCG-GUUCGCUc--GGCU- -5'
23386 5' -59 NC_005259.1 + 46772 0.67 0.530004
Target:  5'- cGCCGAcagccGCGcCCGCCGGGCcgaacaccGAGCCu- -3'
miRNA:   3'- -CGGCUc----UGCuGGCGGUUCG--------CUCGGcu -5'
23386 5' -59 NC_005259.1 + 14161 0.67 0.530004
Target:  5'- cGUCGuGugGAucUCGCCGGGCGGGUgGc -3'
miRNA:   3'- -CGGCuCugCU--GGCGGUUCGCUCGgCu -5'
23386 5' -59 NC_005259.1 + 32549 0.67 0.509921
Target:  5'- uGCUGu--UGGCCGCCccGGCGAGCgCGGg -3'
miRNA:   3'- -CGGCucuGCUGGCGGu-UCGCUCG-GCU- -5'
23386 5' -59 NC_005259.1 + 36680 0.67 0.509921
Target:  5'- cGCCGGGGucuUGACCGuCCucGCccGCCGAu -3'
miRNA:   3'- -CGGCUCU---GCUGGC-GGuuCGcuCGGCU- -5'
23386 5' -59 NC_005259.1 + 44551 0.67 0.509921
Target:  5'- uGCCGAGAcCGGCagGC--AGCGcGCCGAc -3'
miRNA:   3'- -CGGCUCU-GCUGg-CGguUCGCuCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.