miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 5' -59 NC_005259.1 + 63659 0.68 0.499999
Target:  5'- gGCCGGGACG-CCGgaCAccucgggcaccGGCGcGCCGGg -3'
miRNA:   3'- -CGGCUCUGCuGGCg-GU-----------UCGCuCGGCU- -5'
23386 5' -59 NC_005259.1 + 23041 0.68 0.499999
Target:  5'- cCCGAcGACGAgCUGCCcGGCGAGggaagcgacCCGAc -3'
miRNA:   3'- cGGCU-CUGCU-GGCGGuUCGCUC---------GGCU- -5'
23386 5' -59 NC_005259.1 + 21647 0.68 0.499999
Target:  5'- cGCCGAGGCucUCGCgGAGau-GCCGAu -3'
miRNA:   3'- -CGGCUCUGcuGGCGgUUCgcuCGGCU- -5'
23386 5' -59 NC_005259.1 + 60536 0.68 0.499012
Target:  5'- gGCCGGGACGcaGCCGCuCGucGGCaugcccgGuGCCGAc -3'
miRNA:   3'- -CGGCUCUGC--UGGCG-GU--UCG-------CuCGGCU- -5'
23386 5' -59 NC_005259.1 + 28654 0.68 0.499012
Target:  5'- cGCCGAGGCcGCCGUCAAGaucaugaCGuGGCuCGAa -3'
miRNA:   3'- -CGGCUCUGcUGGCGGUUC-------GC-UCG-GCU- -5'
23386 5' -59 NC_005259.1 + 51413 0.68 0.490164
Target:  5'- cGCCGAGG-GGCCGgUugaggucuuGGGCGGGCCa- -3'
miRNA:   3'- -CGGCUCUgCUGGCgG---------UUCGCUCGGcu -5'
23386 5' -59 NC_005259.1 + 40647 0.68 0.490164
Target:  5'- cGCCGAGAaagucauGCuCGCCGAGC-AGCgCGAg -3'
miRNA:   3'- -CGGCUCUgc-----UG-GCGGUUCGcUCG-GCU- -5'
23386 5' -59 NC_005259.1 + 16420 0.68 0.490164
Target:  5'- aCCGAGGUGcCCGUCGAGCG-GCCc- -3'
miRNA:   3'- cGGCUCUGCuGGCGGUUCGCuCGGcu -5'
23386 5' -59 NC_005259.1 + 47071 0.68 0.48042
Target:  5'- -gCGAGGCGAgCGCCGAGaCGAugggcaGCaCGAu -3'
miRNA:   3'- cgGCUCUGCUgGCGGUUC-GCU------CG-GCU- -5'
23386 5' -59 NC_005259.1 + 1892 0.68 0.48042
Target:  5'- nGCCGAGaucgcGCGAgCUGCCGaggaAGCGcGCCGc -3'
miRNA:   3'- -CGGCUC-----UGCU-GGCGGU----UCGCuCGGCu -5'
23386 5' -59 NC_005259.1 + 6227 0.68 0.48042
Target:  5'- cGCCGAcACcguGACCGUgggCGAGUGGGUCGAu -3'
miRNA:   3'- -CGGCUcUG---CUGGCG---GUUCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 17827 0.68 0.470771
Target:  5'- -gCGAGGCcAUCGaCGGGUGGGCCGAg -3'
miRNA:   3'- cgGCUCUGcUGGCgGUUCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 48636 0.68 0.470771
Target:  5'- cGCCGAGACgGGCUGCCAGauCGucGCCa- -3'
miRNA:   3'- -CGGCUCUG-CUGGCGGUUc-GCu-CGGcu -5'
23386 5' -59 NC_005259.1 + 39412 0.68 0.470771
Target:  5'- cCCGAGGCGgugccggacACCGUCAA-UGAGUCGAg -3'
miRNA:   3'- cGGCUCUGC---------UGGCGGUUcGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 51138 0.68 0.467896
Target:  5'- cGUCGGGGCGGCCaugaGCgCGuucggguugaccguGGCGAGCCa- -3'
miRNA:   3'- -CGGCUCUGCUGG----CG-GU--------------UCGCUCGGcu -5'
23386 5' -59 NC_005259.1 + 59497 0.68 0.461222
Target:  5'- aGCCGAGAgUGucACCGCCcGGCGAauuGCUGu -3'
miRNA:   3'- -CGGCUCU-GC--UGGCGGuUCGCU---CGGCu -5'
23386 5' -59 NC_005259.1 + 43817 0.68 0.461222
Target:  5'- uGCCG-GGCGuACCGCCGGacacaGGGCCGc -3'
miRNA:   3'- -CGGCuCUGC-UGGCGGUUcg---CUCGGCu -5'
23386 5' -59 NC_005259.1 + 65703 0.68 0.461222
Target:  5'- gGCCGAguagGACGAggucaCGCCcaAGGCGAGuuGGg -3'
miRNA:   3'- -CGGCU----CUGCUg----GCGG--UUCGCUCggCU- -5'
23386 5' -59 NC_005259.1 + 8975 0.68 0.461222
Target:  5'- uGCCGGGACGuaGgUGCCAgcGGCGAcggcaGCCGc -3'
miRNA:   3'- -CGGCUCUGC--UgGCGGU--UCGCU-----CGGCu -5'
23386 5' -59 NC_005259.1 + 17787 0.68 0.461222
Target:  5'- aCCGAGcguGCGcACCGCgAuAGCGAgGCCGGu -3'
miRNA:   3'- cGGCUC---UGC-UGGCGgU-UCGCU-CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.