miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23386 5' -59 NC_005259.1 + 68514 0.7 0.397446
Target:  5'- uGCCGAcuu--CUGCCGAGCGAGCUGc -3'
miRNA:   3'- -CGGCUcugcuGGCGGUUCGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 65973 0.7 0.363638
Target:  5'- uCCGAGAUcacaGGCgCGCCGAGC-AGCCGc -3'
miRNA:   3'- cGGCUCUG----CUG-GCGGUUCGcUCGGCu -5'
23386 5' -59 NC_005259.1 + 65703 0.68 0.461222
Target:  5'- gGCCGAguagGACGAggucaCGCCcaAGGCGAGuuGGg -3'
miRNA:   3'- -CGGCU----CUGCUg----GCGG--UUCGCUCggCU- -5'
23386 5' -59 NC_005259.1 + 64420 0.66 0.581337
Target:  5'- aGCCGuGAgGgAUCGCCGA-CGAGCUGc -3'
miRNA:   3'- -CGGCuCUgC-UGGCGGUUcGCUCGGCu -5'
23386 5' -59 NC_005259.1 + 63869 0.7 0.394841
Target:  5'- gGCCGgcuggccuugcguGGGCGuggauuccauauCCGCaCGAGCGAGUCGAg -3'
miRNA:   3'- -CGGC-------------UCUGCu-----------GGCG-GUUCGCUCGGCU- -5'
23386 5' -59 NC_005259.1 + 63659 0.68 0.499999
Target:  5'- gGCCGGGACG-CCGgaCAccucgggcaccGGCGcGCCGGg -3'
miRNA:   3'- -CGGCUCUGCuGGCg-GU-----------UCGCuCGGCU- -5'
23386 5' -59 NC_005259.1 + 63427 0.7 0.380291
Target:  5'- uGCCGAG-CaGCCGCuCGGGCGAGacauCGAg -3'
miRNA:   3'- -CGGCUCuGcUGGCG-GUUCGCUCg---GCU- -5'
23386 5' -59 NC_005259.1 + 63160 0.67 0.560641
Target:  5'- cGuuGAG-CaGCCGCCGcAGCGccGCCGAg -3'
miRNA:   3'- -CggCUCuGcUGGCGGU-UCGCu-CGGCU- -5'
23386 5' -59 NC_005259.1 + 61036 0.67 0.550368
Target:  5'- cGgCGAGGuCGACCGaCGGGCGGcucaccuuguGCCGGg -3'
miRNA:   3'- -CgGCUCU-GCUGGCgGUUCGCU----------CGGCU- -5'
23386 5' -59 NC_005259.1 + 60536 0.68 0.499012
Target:  5'- gGCCGGGACGcaGCCGCuCGucGGCaugcccgGuGCCGAc -3'
miRNA:   3'- -CGGCUCUGC--UGGCG-GU--UCG-------CuCGGCU- -5'
23386 5' -59 NC_005259.1 + 60073 0.71 0.347498
Target:  5'- gGCUcGGGCGGCuCGCCGacuuucucgauGGCGAGCuCGAc -3'
miRNA:   3'- -CGGcUCUGCUG-GCGGU-----------UCGCUCG-GCU- -5'
23386 5' -59 NC_005259.1 + 59497 0.68 0.461222
Target:  5'- aGCCGAGAgUGucACCGCCcGGCGAauuGCUGu -3'
miRNA:   3'- -CGGCUCU-GC--UGGCGGuUCGCU---CGGCu -5'
23386 5' -59 NC_005259.1 + 58792 0.66 0.570967
Target:  5'- gGUCGAGGCGGugaUUGCCucGGCGGGCUc- -3'
miRNA:   3'- -CGGCUCUGCU---GGCGGu-UCGCUCGGcu -5'
23386 5' -59 NC_005259.1 + 58170 0.67 0.554471
Target:  5'- cGCaCGGGAucucgacgcacgucuUGACCGCCGugGGCuuGCCGGu -3'
miRNA:   3'- -CG-GCUCU---------------GCUGGCGGU--UCGcuCGGCU- -5'
23386 5' -59 NC_005259.1 + 57979 0.68 0.451776
Target:  5'- cGCCGGGAucgUGACC-CCGGuCGAGCCa- -3'
miRNA:   3'- -CGGCUCU---GCUGGcGGUUcGCUCGGcu -5'
23386 5' -59 NC_005259.1 + 57254 0.66 0.580298
Target:  5'- uGCCGGGAacaGuCCGUUggGCGAGggauugaCCGGu -3'
miRNA:   3'- -CGGCUCUg--CuGGCGGuuCGCUC-------GGCU- -5'
23386 5' -59 NC_005259.1 + 56884 0.7 0.355503
Target:  5'- -aUGAGcCGACCGCCAaucgcAGCGuGGCCGc -3'
miRNA:   3'- cgGCUCuGCUGGCGGU-----UCGC-UCGGCu -5'
23386 5' -59 NC_005259.1 + 56421 0.66 0.569932
Target:  5'- cGCCGAGcucaagcagagcaGCGAgCGCCGGGCcacgcagcucaGGGuuGAc -3'
miRNA:   3'- -CGGCUC-------------UGCUgGCGGUUCG-----------CUCggCU- -5'
23386 5' -59 NC_005259.1 + 55905 0.7 0.397446
Target:  5'- cGCCGGGGucgcuggccaGACCGCUGgucugcucGGCGAGaCCGAg -3'
miRNA:   3'- -CGGCUCUg---------CUGGCGGU--------UCGCUC-GGCU- -5'
23386 5' -59 NC_005259.1 + 55102 0.67 0.534055
Target:  5'- uGCCGAuggcGGCGaaaaaugcaccggcuGCCguGCCGAGCaGGCCGAc -3'
miRNA:   3'- -CGGCU----CUGC---------------UGG--CGGUUCGcUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.