Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23391 | 3' | -50.7 | NC_005259.1 | + | 65689 | 0.69 | 0.857747 |
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Target: 5'- cGG-CCCGACGAGCGGGccgaguaggacGAGGu-CACg -3' miRNA: 3'- aCUgGGGCUGCUCGUUU-----------UUCCuuGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 29406 | 0.68 | 0.866096 |
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Target: 5'- gGGCCUCGGCGAGCucgu-GcGcGCACa -3' miRNA: 3'- aCUGGGGCUGCUCGuuuuuC-CuUGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 5641 | 0.68 | 0.874192 |
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Target: 5'- cGugCCCGGCGAGgAc--GGcGGGCGCu -3' miRNA: 3'- aCugGGGCUGCUCgUuuuUC-CUUGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 24417 | 0.68 | 0.874192 |
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Target: 5'- aUGACCUCGGCGAGgAAGcgacAGcGGGCAa -3' miRNA: 3'- -ACUGGGGCUGCUCgUUUu---UC-CUUGUg -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 1291 | 0.68 | 0.882027 |
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Target: 5'- cGACCCCGAgguCGAGCucuacgcGGucGuGAGCGCc -3' miRNA: 3'- aCUGGGGCU---GCUCGu------UUuuC-CUUGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 46518 | 0.68 | 0.882027 |
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Target: 5'- cGAUCCCG-CGAGCcGGucGGGGAuCGCc -3' miRNA: 3'- aCUGGGGCuGCUCGuUU--UUCCUuGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 18041 | 0.68 | 0.889594 |
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Target: 5'- -aACCCCGGCGAGCcguuuGAGGcguggaucuccGACAa -3' miRNA: 3'- acUGGGGCUGCUCGuuu--UUCC-----------UUGUg -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 43615 | 0.68 | 0.889594 |
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Target: 5'- aUGGCCCCGAUGAucgGCAccuGAG--ACACa -3' miRNA: 3'- -ACUGGGGCUGCU---CGUuu-UUCcuUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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