Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23391 | 3' | -50.7 | NC_005259.1 | + | 55559 | 0.67 | 0.923251 |
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Target: 5'- gGAUgCCGAa-AGCGAGcAGGAACAUc -3' miRNA: 3'- aCUGgGGCUgcUCGUUUuUCCUUGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 57989 | 0.68 | 0.896888 |
|
Target: 5'- gUGACCCCGGuCGAGCcAGcgaccauguuGAGGAuCGu -3' miRNA: 3'- -ACUGGGGCU-GCUCGuUU----------UUCCUuGUg -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 60583 | 0.66 | 0.934712 |
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Target: 5'- cGGCCCaCGGCGAGuCGGGugccgucaucGAGcAGCACa -3' miRNA: 3'- aCUGGG-GCUGCUC-GUUU----------UUCcUUGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 63559 | 0.66 | 0.940011 |
|
Target: 5'- cGGCCaCCGACGcGaCGAGcGGGAuauACGCc -3' miRNA: 3'- aCUGG-GGCUGCuC-GUUUuUCCU---UGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 64429 | 0.74 | 0.541585 |
|
Target: 5'- gGAUCgCCGACGAGCugcc-GGGGCGCu -3' miRNA: 3'- aCUGG-GGCUGCUCGuuuuuCCUUGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 64902 | 0.69 | 0.831257 |
|
Target: 5'- gUGACacgagcgaCGGCGAGCGu-GAGGAugACg -3' miRNA: 3'- -ACUGgg------GCUGCUCGUuuUUCCUugUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 65689 | 0.69 | 0.857747 |
|
Target: 5'- cGG-CCCGACGAGCGGGccgaguaggacGAGGu-CACg -3' miRNA: 3'- aCUgGGGCUGCUCGUUU-----------UUCCuuGUG- -5' |
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| 23391 | 3' | -50.7 | NC_005259.1 | + | 66929 | 0.69 | 0.840318 |
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Target: 5'- gGugCUCGAcCGGGguGAgcGGGACACc -3' miRNA: 3'- aCugGGGCU-GCUCguUUuuCCUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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