Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23391 | 3' | -50.7 | NC_005259.1 | + | 10082 | 0.71 | 0.730453 |
Target: 5'- gGACgCCGACGAGUAGAccccGAGGc-CACc -3' miRNA: 3'- aCUGgGGCUGCUCGUUU----UUCCuuGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 9356 | 0.66 | 0.94205 |
Target: 5'- aUGACCgucuguaggucguacUCGGCGAGCucgGAGAGcAACGCa -3' miRNA: 3'- -ACUGG---------------GGCUGCUCGu--UUUUCcUUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 6539 | 0.66 | 0.945024 |
Target: 5'- cGGCCUCGggGCGAGCGGuGAAGcuguGCGCg -3' miRNA: 3'- aCUGGGGC--UGCUCGUU-UUUCcu--UGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 5641 | 0.68 | 0.874192 |
Target: 5'- cGugCCCGGCGAGgAc--GGcGGGCGCu -3' miRNA: 3'- aCugGGGCUGCUCgUuuuUC-CUUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 4701 | 0.67 | 0.917088 |
Target: 5'- cGGCCCCGugGuGCGAu---GAcCGCg -3' miRNA: 3'- aCUGGGGCugCuCGUUuuucCUuGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 4121 | 0.69 | 0.828496 |
Target: 5'- cGGCCUCGACGuggccaagaccgucGGCGAGuucAAGGA-CGCg -3' miRNA: 3'- aCUGGGGCUGC--------------UCGUUU---UUCCUuGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 1888 | 0.67 | 0.922647 |
Target: 5'- aGGCCgCCGagaucgcGCGAGCugccGAGGAAgCGCg -3' miRNA: 3'- aCUGG-GGC-------UGCUCGuuu-UUCCUU-GUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 1291 | 0.68 | 0.882027 |
Target: 5'- cGACCCCGAgguCGAGCucuacgcGGucGuGAGCGCc -3' miRNA: 3'- aCUGGGGCU---GCUCGu------UUuuC-CUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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