Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23391 | 3' | -50.7 | NC_005259.1 | + | 24417 | 0.68 | 0.874192 |
Target: 5'- aUGACCUCGGCGAGgAAGcgacAGcGGGCAa -3' miRNA: 3'- -ACUGGGGCUGCUCgUUUu---UC-CUUGUg -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 24642 | 0.66 | 0.949754 |
Target: 5'- cGcACCCCGACGA-CGAGAcugacgacGAGCGCg -3' miRNA: 3'- aC-UGGGGCUGCUcGUUUUuc------CUUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 25598 | 0.69 | 0.840318 |
Target: 5'- --uCCUCGuuGCGGGCAGcGAGGAugACa -3' miRNA: 3'- acuGGGGC--UGCUCGUUuUUCCUugUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 29406 | 0.68 | 0.866096 |
Target: 5'- gGGCCUCGGCGAGCucgu-GcGcGCACa -3' miRNA: 3'- aCUGGGGCUGCUCGuuuuuC-CuUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 30673 | 0.66 | 0.934712 |
Target: 5'- ---gCCCGGCGAGUAGcuggccaccuGAGGcAGCACg -3' miRNA: 3'- acugGGGCUGCUCGUUu---------UUCC-UUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 32027 | 0.66 | 0.954206 |
Target: 5'- aGuuCCCCGGCucaucgcaucGGGUugcuGAGGAACGCg -3' miRNA: 3'- aCu-GGGGCUG----------CUCGuuu-UUCCUUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 32559 | 0.76 | 0.457126 |
Target: 5'- -cGCCCCGGCGAGCGc--GGGGAUAg -3' miRNA: 3'- acUGGGGCUGCUCGUuuuUCCUUGUg -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 32866 | 0.66 | 0.944535 |
Target: 5'- uUGACCUCGACGcGCGcgGugaucgauucaccGGGGGCGa -3' miRNA: 3'- -ACUGGGGCUGCuCGUuuU-------------UCCUUGUg -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 34309 | 0.66 | 0.949754 |
Target: 5'- cGACCCaCGACcAGCGGucacGGAACuCg -3' miRNA: 3'- aCUGGG-GCUGcUCGUUuuu-CCUUGuG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 37767 | 0.71 | 0.730453 |
Target: 5'- gUGGCCCCuGCGGGCAc----GAGCGCa -3' miRNA: 3'- -ACUGGGGcUGCUCGUuuuucCUUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 41264 | 0.66 | 0.949754 |
Target: 5'- -cGCCCCGGuCGAGCAcccucGucGGcGCACu -3' miRNA: 3'- acUGGGGCU-GCUCGUu----UuuCCuUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 41494 | 0.7 | 0.782889 |
Target: 5'- cGACCUCGGCGguggcgGGCAGAccguGGAucuGCACg -3' miRNA: 3'- aCUGGGGCUGC------UCGUUUuu--CCU---UGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 42531 | 0.79 | 0.328551 |
Target: 5'- cGGCCCCGAUGGGCAccGAGGuGGCGg -3' miRNA: 3'- aCUGGGGCUGCUCGUuuUUCC-UUGUg -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 43042 | 0.71 | 0.716339 |
Target: 5'- aGGCCgCCGAgcAGCGAAccgacggggucgguGAGGAACGCg -3' miRNA: 3'- aCUGG-GGCUgcUCGUUU--------------UUCCUUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 43615 | 0.68 | 0.889594 |
Target: 5'- aUGGCCCCGAUGAucgGCAccuGAG--ACACa -3' miRNA: 3'- -ACUGGGGCUGCU---CGUuu-UUCcuUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 46518 | 0.68 | 0.882027 |
Target: 5'- cGAUCCCG-CGAGCcGGucGGGGAuCGCc -3' miRNA: 3'- aCUGGGGCuGCUCGuUU--UUCCUuGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 48095 | 0.73 | 0.641843 |
Target: 5'- uUGAgCCCGACGGGUccggucagGAAAccGAGCACa -3' miRNA: 3'- -ACUgGGGCUGCUCG--------UUUUucCUUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 49576 | 0.68 | 0.896888 |
Target: 5'- gUGGCCagaCCGGCGGGCG---GGGucAGCACc -3' miRNA: 3'- -ACUGG---GGCUGCUCGUuuuUCC--UUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 51025 | 0.68 | 0.896888 |
Target: 5'- cGugCuaCCGACGAGCGGc-GGGcACGCg -3' miRNA: 3'- aCugG--GGCUGCUCGUUuuUCCuUGUG- -5' |
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23391 | 3' | -50.7 | NC_005259.1 | + | 52254 | 0.67 | 0.929125 |
Target: 5'- cGGCCCCucucaggggGGcCGGGCAGAcAGGAccggcccgauGCGCg -3' miRNA: 3'- aCUGGGG---------CU-GCUCGUUUuUCCU----------UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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