miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23391 3' -50.7 NC_005259.1 + 1291 0.68 0.882027
Target:  5'- cGACCCCGAgguCGAGCucuacgcGGucGuGAGCGCc -3'
miRNA:   3'- aCUGGGGCU---GCUCGu------UUuuC-CUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 1888 0.67 0.922647
Target:  5'- aGGCCgCCGagaucgcGCGAGCugccGAGGAAgCGCg -3'
miRNA:   3'- aCUGG-GGC-------UGCUCGuuu-UUCCUU-GUG- -5'
23391 3' -50.7 NC_005259.1 + 4121 0.69 0.828496
Target:  5'- cGGCCUCGACGuggccaagaccgucGGCGAGuucAAGGA-CGCg -3'
miRNA:   3'- aCUGGGGCUGC--------------UCGUUU---UUCCUuGUG- -5'
23391 3' -50.7 NC_005259.1 + 4701 0.67 0.917088
Target:  5'- cGGCCCCGugGuGCGAu---GAcCGCg -3'
miRNA:   3'- aCUGGGGCugCuCGUUuuucCUuGUG- -5'
23391 3' -50.7 NC_005259.1 + 5641 0.68 0.874192
Target:  5'- cGugCCCGGCGAGgAc--GGcGGGCGCu -3'
miRNA:   3'- aCugGGGCUGCUCgUuuuUC-CUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 6539 0.66 0.945024
Target:  5'- cGGCCUCGggGCGAGCGGuGAAGcuguGCGCg -3'
miRNA:   3'- aCUGGGGC--UGCUCGUU-UUUCcu--UGUG- -5'
23391 3' -50.7 NC_005259.1 + 9356 0.66 0.94205
Target:  5'- aUGACCgucuguaggucguacUCGGCGAGCucgGAGAGcAACGCa -3'
miRNA:   3'- -ACUGG---------------GGCUGCUCGu--UUUUCcUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 10082 0.71 0.730453
Target:  5'- gGACgCCGACGAGUAGAccccGAGGc-CACc -3'
miRNA:   3'- aCUGgGGCUGCUCGUUU----UUCCuuGUG- -5'
23391 3' -50.7 NC_005259.1 + 10648 0.67 0.929125
Target:  5'- uUGGCCUCGcgguCGAGCGccuuGAGGAugGu -3'
miRNA:   3'- -ACUGGGGCu---GCUCGUuu--UUCCUugUg -5'
23391 3' -50.7 NC_005259.1 + 13831 0.66 0.954206
Target:  5'- gUGAUgaCCGACGGGCAcauugcccGGcGAACGCa -3'
miRNA:   3'- -ACUGg-GGCUGCUCGUuuu-----UC-CUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 13898 0.7 0.796905
Target:  5'- aGACCCCGACaaccaacaaccaCAGAAAGGAAC-Cg -3'
miRNA:   3'- aCUGGGGCUGcuc---------GUUUUUCCUUGuG- -5'
23391 3' -50.7 NC_005259.1 + 16238 0.7 0.799864
Target:  5'- cGcACCCCGGugcugcgcaccgacCGAGCAGAuauGGGAuCGCa -3'
miRNA:   3'- aC-UGGGGCU--------------GCUCGUUUu--UCCUuGUG- -5'
23391 3' -50.7 NC_005259.1 + 16381 0.7 0.796905
Target:  5'- -uGCgCCGACGAGCuccacaccauacGGGGGACGCa -3'
miRNA:   3'- acUGgGGCUGCUCGuuu---------UUCCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 16425 0.67 0.910639
Target:  5'- gGugCCCGuCGAGCGgcccAAAccGGGCACc -3'
miRNA:   3'- aCugGGGCuGCUCGU----UUUucCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 16562 0.66 0.934712
Target:  5'- aGAUCCCGcccacCGGGCAGAucgccGAGGAcauCGCc -3'
miRNA:   3'- aCUGGGGCu----GCUCGUUU-----UUCCUu--GUG- -5'
23391 3' -50.7 NC_005259.1 + 18041 0.68 0.889594
Target:  5'- -aACCCCGGCGAGCcguuuGAGGcguggaucuccGACAa -3'
miRNA:   3'- acUGGGGCUGCUCGuuu--UUCC-----------UUGUg -5'
23391 3' -50.7 NC_005259.1 + 20565 0.66 0.954206
Target:  5'- cGACCCCGA-GAuCAucGAGGcAUACg -3'
miRNA:   3'- aCUGGGGCUgCUcGUuuUUCCuUGUG- -5'
23391 3' -50.7 NC_005259.1 + 21014 0.66 0.934712
Target:  5'- cGACCCUGACcGGCAgcugaccgauGAccGGcGCGCg -3'
miRNA:   3'- aCUGGGGCUGcUCGU----------UUuuCCuUGUG- -5'
23391 3' -50.7 NC_005259.1 + 23671 0.66 0.954206
Target:  5'- gGACCgCCGAcccCGAGC----AGGcGCACg -3'
miRNA:   3'- aCUGG-GGCU---GCUCGuuuuUCCuUGUG- -5'
23391 3' -50.7 NC_005259.1 + 23750 0.73 0.630606
Target:  5'- cGACCCCGACGccccGCAGAccGGcccCACa -3'
miRNA:   3'- aCUGGGGCUGCu---CGUUUuuCCuu-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.