miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23391 3' -50.7 NC_005259.1 + 66929 0.69 0.840318
Target:  5'- gGugCUCGAcCGGGguGAgcGGGACACc -3'
miRNA:   3'- aCugGGGCU-GCUCguUUuuCCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 65689 0.69 0.857747
Target:  5'- cGG-CCCGACGAGCGGGccgaguaggacGAGGu-CACg -3'
miRNA:   3'- aCUgGGGCUGCUCGUUU-----------UUCCuuGUG- -5'
23391 3' -50.7 NC_005259.1 + 64902 0.69 0.831257
Target:  5'- gUGACacgagcgaCGGCGAGCGu-GAGGAugACg -3'
miRNA:   3'- -ACUGgg------GCUGCUCGUuuUUCCUugUG- -5'
23391 3' -50.7 NC_005259.1 + 64429 0.74 0.541585
Target:  5'- gGAUCgCCGACGAGCugcc-GGGGCGCu -3'
miRNA:   3'- aCUGG-GGCUGCUCGuuuuuCCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 63559 0.66 0.940011
Target:  5'- cGGCCaCCGACGcGaCGAGcGGGAuauACGCc -3'
miRNA:   3'- aCUGG-GGCUGCuC-GUUUuUCCU---UGUG- -5'
23391 3' -50.7 NC_005259.1 + 60583 0.66 0.934712
Target:  5'- cGGCCCaCGGCGAGuCGGGugccgucaucGAGcAGCACa -3'
miRNA:   3'- aCUGGG-GCUGCUC-GUUU----------UUCcUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 57989 0.68 0.896888
Target:  5'- gUGACCCCGGuCGAGCcAGcgaccauguuGAGGAuCGu -3'
miRNA:   3'- -ACUGGGGCU-GCUCGuUU----------UUCCUuGUg -5'
23391 3' -50.7 NC_005259.1 + 55559 0.67 0.923251
Target:  5'- gGAUgCCGAa-AGCGAGcAGGAACAUc -3'
miRNA:   3'- aCUGgGGCUgcUCGUUUuUCCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 52254 0.67 0.929125
Target:  5'- cGGCCCCucucaggggGGcCGGGCAGAcAGGAccggcccgauGCGCg -3'
miRNA:   3'- aCUGGGG---------CU-GCUCGUUUuUCCU----------UGUG- -5'
23391 3' -50.7 NC_005259.1 + 51025 0.68 0.896888
Target:  5'- cGugCuaCCGACGAGCGGc-GGGcACGCg -3'
miRNA:   3'- aCugG--GGCUGCUCGUUuuUCCuUGUG- -5'
23391 3' -50.7 NC_005259.1 + 49576 0.68 0.896888
Target:  5'- gUGGCCagaCCGGCGGGCG---GGGucAGCACc -3'
miRNA:   3'- -ACUGG---GGCUGCUCGUuuuUCC--UUGUG- -5'
23391 3' -50.7 NC_005259.1 + 48095 0.73 0.641843
Target:  5'- uUGAgCCCGACGGGUccggucagGAAAccGAGCACa -3'
miRNA:   3'- -ACUgGGGCUGCUCG--------UUUUucCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 46518 0.68 0.882027
Target:  5'- cGAUCCCG-CGAGCcGGucGGGGAuCGCc -3'
miRNA:   3'- aCUGGGGCuGCUCGuUU--UUCCUuGUG- -5'
23391 3' -50.7 NC_005259.1 + 43615 0.68 0.889594
Target:  5'- aUGGCCCCGAUGAucgGCAccuGAG--ACACa -3'
miRNA:   3'- -ACUGGGGCUGCU---CGUuu-UUCcuUGUG- -5'
23391 3' -50.7 NC_005259.1 + 43042 0.71 0.716339
Target:  5'- aGGCCgCCGAgcAGCGAAccgacggggucgguGAGGAACGCg -3'
miRNA:   3'- aCUGG-GGCUgcUCGUUU--------------UUCCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 42531 0.79 0.328551
Target:  5'- cGGCCCCGAUGGGCAccGAGGuGGCGg -3'
miRNA:   3'- aCUGGGGCUGCUCGUuuUUCC-UUGUg -5'
23391 3' -50.7 NC_005259.1 + 41494 0.7 0.782889
Target:  5'- cGACCUCGGCGguggcgGGCAGAccguGGAucuGCACg -3'
miRNA:   3'- aCUGGGGCUGC------UCGUUUuu--CCU---UGUG- -5'
23391 3' -50.7 NC_005259.1 + 41264 0.66 0.949754
Target:  5'- -cGCCCCGGuCGAGCAcccucGucGGcGCACu -3'
miRNA:   3'- acUGGGGCU-GCUCGUu----UuuCCuUGUG- -5'
23391 3' -50.7 NC_005259.1 + 37767 0.71 0.730453
Target:  5'- gUGGCCCCuGCGGGCAc----GAGCGCa -3'
miRNA:   3'- -ACUGGGGcUGCUCGUuuuucCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 34309 0.66 0.949754
Target:  5'- cGACCCaCGACcAGCGGucacGGAACuCg -3'
miRNA:   3'- aCUGGG-GCUGcUCGUUuuu-CCUUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.