miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23391 3' -50.7 NC_005259.1 + 42531 0.79 0.328551
Target:  5'- cGGCCCCGAUGGGCAccGAGGuGGCGg -3'
miRNA:   3'- aCUGGGGCUGCUCGUuuUUCC-UUGUg -5'
23391 3' -50.7 NC_005259.1 + 32559 0.76 0.457126
Target:  5'- -cGCCCCGGCGAGCGc--GGGGAUAg -3'
miRNA:   3'- acUGGGGCUGCUCGUuuuUCCUUGUg -5'
23391 3' -50.7 NC_005259.1 + 64429 0.74 0.541585
Target:  5'- gGAUCgCCGACGAGCugcc-GGGGCGCu -3'
miRNA:   3'- aCUGG-GGCUGCUCGuuuuuCCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 23750 0.73 0.630606
Target:  5'- cGACCCCGACGccccGCAGAccGGcccCACa -3'
miRNA:   3'- aCUGGGGCUGCu---CGUUUuuCCuu-GUG- -5'
23391 3' -50.7 NC_005259.1 + 48095 0.73 0.641843
Target:  5'- uUGAgCCCGACGGGUccggucagGAAAccGAGCACa -3'
miRNA:   3'- -ACUgGGGCUGCUCG--------UUUUucCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 43042 0.71 0.716339
Target:  5'- aGGCCgCCGAgcAGCGAAccgacggggucgguGAGGAACGCg -3'
miRNA:   3'- aCUGG-GGCUgcUCGUUU--------------UUCCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 37767 0.71 0.730453
Target:  5'- gUGGCCCCuGCGGGCAc----GAGCGCa -3'
miRNA:   3'- -ACUGGGGcUGCUCGUuuuucCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 10082 0.71 0.730453
Target:  5'- gGACgCCGACGAGUAGAccccGAGGc-CACc -3'
miRNA:   3'- aCUGgGGCUGCUCGUUU----UUCCuuGUG- -5'
23391 3' -50.7 NC_005259.1 + 41494 0.7 0.782889
Target:  5'- cGACCUCGGCGguggcgGGCAGAccguGGAucuGCACg -3'
miRNA:   3'- aCUGGGGCUGC------UCGUUUuu--CCU---UGUG- -5'
23391 3' -50.7 NC_005259.1 + 16381 0.7 0.796905
Target:  5'- -uGCgCCGACGAGCuccacaccauacGGGGGACGCa -3'
miRNA:   3'- acUGgGGCUGCUCGuuu---------UUCCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 13898 0.7 0.796905
Target:  5'- aGACCCCGACaaccaacaaccaCAGAAAGGAAC-Cg -3'
miRNA:   3'- aCUGGGGCUGcuc---------GUUUUUCCUUGuG- -5'
23391 3' -50.7 NC_005259.1 + 16238 0.7 0.799864
Target:  5'- cGcACCCCGGugcugcgcaccgacCGAGCAGAuauGGGAuCGCa -3'
miRNA:   3'- aC-UGGGGCU--------------GCUCGUUUu--UCCUuGUG- -5'
23391 3' -50.7 NC_005259.1 + 4121 0.69 0.828496
Target:  5'- cGGCCUCGACGuggccaagaccgucGGCGAGuucAAGGA-CGCg -3'
miRNA:   3'- aCUGGGGCUGC--------------UCGUUU---UUCCUuGUG- -5'
23391 3' -50.7 NC_005259.1 + 64902 0.69 0.831257
Target:  5'- gUGACacgagcgaCGGCGAGCGu-GAGGAugACg -3'
miRNA:   3'- -ACUGgg------GCUGCUCGUuuUUCCUugUG- -5'
23391 3' -50.7 NC_005259.1 + 66929 0.69 0.840318
Target:  5'- gGugCUCGAcCGGGguGAgcGGGACACc -3'
miRNA:   3'- aCugGGGCU-GCUCguUUuuCCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 25598 0.69 0.840318
Target:  5'- --uCCUCGuuGCGGGCAGcGAGGAugACa -3'
miRNA:   3'- acuGGGGC--UGCUCGUUuUUCCUugUG- -5'
23391 3' -50.7 NC_005259.1 + 65689 0.69 0.857747
Target:  5'- cGG-CCCGACGAGCGGGccgaguaggacGAGGu-CACg -3'
miRNA:   3'- aCUgGGGCUGCUCGUUU-----------UUCCuuGUG- -5'
23391 3' -50.7 NC_005259.1 + 29406 0.68 0.866096
Target:  5'- gGGCCUCGGCGAGCucgu-GcGcGCACa -3'
miRNA:   3'- aCUGGGGCUGCUCGuuuuuC-CuUGUG- -5'
23391 3' -50.7 NC_005259.1 + 5641 0.68 0.874192
Target:  5'- cGugCCCGGCGAGgAc--GGcGGGCGCu -3'
miRNA:   3'- aCugGGGCUGCUCgUuuuUC-CUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 24417 0.68 0.874192
Target:  5'- aUGACCUCGGCGAGgAAGcgacAGcGGGCAa -3'
miRNA:   3'- -ACUGGGGCUGCUCgUUUu---UC-CUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.