miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23391 3' -50.7 NC_005259.1 + 46518 0.68 0.882027
Target:  5'- cGAUCCCG-CGAGCcGGucGGGGAuCGCc -3'
miRNA:   3'- aCUGGGGCuGCUCGuUU--UUCCUuGUG- -5'
23391 3' -50.7 NC_005259.1 + 1291 0.68 0.882027
Target:  5'- cGACCCCGAgguCGAGCucuacgcGGucGuGAGCGCc -3'
miRNA:   3'- aCUGGGGCU---GCUCGu------UUuuC-CUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 18041 0.68 0.889594
Target:  5'- -aACCCCGGCGAGCcguuuGAGGcguggaucuccGACAa -3'
miRNA:   3'- acUGGGGCUGCUCGuuu--UUCC-----------UUGUg -5'
23391 3' -50.7 NC_005259.1 + 43615 0.68 0.889594
Target:  5'- aUGGCCCCGAUGAucgGCAccuGAG--ACACa -3'
miRNA:   3'- -ACUGGGGCUGCU---CGUuu-UUCcuUGUG- -5'
23391 3' -50.7 NC_005259.1 + 51025 0.68 0.896888
Target:  5'- cGugCuaCCGACGAGCGGc-GGGcACGCg -3'
miRNA:   3'- aCugG--GGCUGCUCGUUuuUCCuUGUG- -5'
23391 3' -50.7 NC_005259.1 + 57989 0.68 0.896888
Target:  5'- gUGACCCCGGuCGAGCcAGcgaccauguuGAGGAuCGu -3'
miRNA:   3'- -ACUGGGGCU-GCUCGuUU----------UUCCUuGUg -5'
23391 3' -50.7 NC_005259.1 + 49576 0.68 0.896888
Target:  5'- gUGGCCagaCCGGCGGGCG---GGGucAGCACc -3'
miRNA:   3'- -ACUGG---GGCUGCUCGUuuuUCC--UUGUG- -5'
23391 3' -50.7 NC_005259.1 + 16425 0.67 0.910639
Target:  5'- gGugCCCGuCGAGCGgcccAAAccGGGCACc -3'
miRNA:   3'- aCugGGGCuGCUCGU----UUUucCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 4701 0.67 0.917088
Target:  5'- cGGCCCCGugGuGCGAu---GAcCGCg -3'
miRNA:   3'- aCUGGGGCugCuCGUUuuucCUuGUG- -5'
23391 3' -50.7 NC_005259.1 + 1888 0.67 0.922647
Target:  5'- aGGCCgCCGagaucgcGCGAGCugccGAGGAAgCGCg -3'
miRNA:   3'- aCUGG-GGC-------UGCUCGuuu-UUCCUU-GUG- -5'
23391 3' -50.7 NC_005259.1 + 55559 0.67 0.923251
Target:  5'- gGAUgCCGAa-AGCGAGcAGGAACAUc -3'
miRNA:   3'- aCUGgGGCUgcUCGUUUuUCCUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 52254 0.67 0.929125
Target:  5'- cGGCCCCucucaggggGGcCGGGCAGAcAGGAccggcccgauGCGCg -3'
miRNA:   3'- aCUGGGG---------CU-GCUCGUUUuUCCU----------UGUG- -5'
23391 3' -50.7 NC_005259.1 + 10648 0.67 0.929125
Target:  5'- uUGGCCUCGcgguCGAGCGccuuGAGGAugGu -3'
miRNA:   3'- -ACUGGGGCu---GCUCGUuu--UUCCUugUg -5'
23391 3' -50.7 NC_005259.1 + 16562 0.66 0.934712
Target:  5'- aGAUCCCGcccacCGGGCAGAucgccGAGGAcauCGCc -3'
miRNA:   3'- aCUGGGGCu----GCUCGUUU-----UUCCUu--GUG- -5'
23391 3' -50.7 NC_005259.1 + 21014 0.66 0.934712
Target:  5'- cGACCCUGACcGGCAgcugaccgauGAccGGcGCGCg -3'
miRNA:   3'- aCUGGGGCUGcUCGU----------UUuuCCuUGUG- -5'
23391 3' -50.7 NC_005259.1 + 30673 0.66 0.934712
Target:  5'- ---gCCCGGCGAGUAGcuggccaccuGAGGcAGCACg -3'
miRNA:   3'- acugGGGCUGCUCGUUu---------UUCC-UUGUG- -5'
23391 3' -50.7 NC_005259.1 + 60583 0.66 0.934712
Target:  5'- cGGCCCaCGGCGAGuCGGGugccgucaucGAGcAGCACa -3'
miRNA:   3'- aCUGGG-GCUGCUC-GUUU----------UUCcUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 63559 0.66 0.940011
Target:  5'- cGGCCaCCGACGcGaCGAGcGGGAuauACGCc -3'
miRNA:   3'- aCUGG-GGCUGCuC-GUUUuUCCU---UGUG- -5'
23391 3' -50.7 NC_005259.1 + 9356 0.66 0.94205
Target:  5'- aUGACCgucuguaggucguacUCGGCGAGCucgGAGAGcAACGCa -3'
miRNA:   3'- -ACUGG---------------GGCUGCUCGu--UUUUCcUUGUG- -5'
23391 3' -50.7 NC_005259.1 + 32866 0.66 0.944535
Target:  5'- uUGACCUCGACGcGCGcgGugaucgauucaccGGGGGCGa -3'
miRNA:   3'- -ACUGGGGCUGCuCGUuuU-------------UCCUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.