miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23391 5' -57.4 NC_005259.1 + 58810 0.66 0.736906
Target:  5'- cUCGg---CGGGcUCGCGCUGCUCG-GCa -3'
miRNA:   3'- -GGCaugaGCCU-AGCGUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 3128 0.71 0.406208
Target:  5'- aCCGUggGCagCGGAcgGCACCGCCCGuGg -3'
miRNA:   3'- -GGCA--UGa-GCCUagCGUGGCGGGCuCg -5'
23391 5' -57.4 NC_005259.1 + 23871 0.71 0.406208
Target:  5'- aCCGag--UGGAUgCGCuauccgcuGCCGCCCGAGCc -3'
miRNA:   3'- -GGCaugaGCCUA-GCG--------UGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 45328 0.71 0.41509
Target:  5'- gCCGaACUgcgUGGccUGCGCCGCCUGGGCc -3'
miRNA:   3'- -GGCaUGA---GCCuaGCGUGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 64421 0.71 0.41509
Target:  5'- gCCGUGag-GGAUCGCcgacgaGCUGCCgGGGCg -3'
miRNA:   3'- -GGCAUgagCCUAGCG------UGGCGGgCUCG- -5'
23391 5' -57.4 NC_005259.1 + 12988 0.71 0.418677
Target:  5'- aCCGUggugcucgcguucgcACUCGGcuaCGcCGCCGCCCG-GCc -3'
miRNA:   3'- -GGCA---------------UGAGCCua-GC-GUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 39206 0.7 0.455542
Target:  5'- uCCGUGCUUGGAUgcccugccacaaCGCAUUgaggcccucgacaagGCCCGAGa -3'
miRNA:   3'- -GGCAUGAGCCUA------------GCGUGG---------------CGGGCUCg -5'
23391 5' -57.4 NC_005259.1 + 26832 0.7 0.461222
Target:  5'- -gGUGC-CGGggCGguCUGCUCGGGCa -3'
miRNA:   3'- ggCAUGaGCCuaGCguGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 37239 0.7 0.469811
Target:  5'- cCCGUGC-CGGAuuggcugccgccgUUGCcaggcuugagGCCGCCCG-GCa -3'
miRNA:   3'- -GGCAUGaGCCU-------------AGCG----------UGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 4425 0.71 0.397446
Target:  5'- aCCGcGCgccCGaGGUCGaGCCGCCCGuGCg -3'
miRNA:   3'- -GGCaUGa--GC-CUAGCgUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 34884 0.71 0.397446
Target:  5'- aCCGgggugcCUCGGGcaggaCGgGCCGCUCGGGCa -3'
miRNA:   3'- -GGCau----GAGCCUa----GCgUGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 18643 0.72 0.388806
Target:  5'- cCCGUuCUCGcAUUGgcgcgauaugcCGCCGCCCGAGUa -3'
miRNA:   3'- -GGCAuGAGCcUAGC-----------GUGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 20458 0.79 0.1472
Target:  5'- gCCGgggugGCUCGGAugaccgccgucgaccUCGaCACCGCCCG-GCa -3'
miRNA:   3'- -GGCa----UGAGCCU---------------AGC-GUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 10558 0.76 0.214487
Target:  5'- aUGUGCUCGaucaAUCGCGCCGCCuCGAcgGCg -3'
miRNA:   3'- gGCAUGAGCc---UAGCGUGGCGG-GCU--CG- -5'
23391 5' -57.4 NC_005259.1 + 1432 0.76 0.225534
Target:  5'- gUCGUGCUCGGGcUgGCACUGCUCGcguGCu -3'
miRNA:   3'- -GGCAUGAGCCU-AgCGUGGCGGGCu--CG- -5'
23391 5' -57.4 NC_005259.1 + 20523 0.73 0.32426
Target:  5'- cCCGaGCaCGGGU-GCGCUGCCCGcAGCg -3'
miRNA:   3'- -GGCaUGaGCCUAgCGUGGCGGGC-UCG- -5'
23391 5' -57.4 NC_005259.1 + 44228 0.73 0.339622
Target:  5'- uUCGaGCUCGcccgcCGCGCCGCCCGcGCg -3'
miRNA:   3'- -GGCaUGAGCcua--GCGUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 16999 0.72 0.347498
Target:  5'- aCGUGCUCGGAUCaacccccauCACCGCCauccucGGCg -3'
miRNA:   3'- gGCAUGAGCCUAGc--------GUGGCGGgc----UCG- -5'
23391 5' -57.4 NC_005259.1 + 12195 0.72 0.372734
Target:  5'- aCCGUGgUCGuGuagagaugcaccggCGCACCGCCCGcuGGCc -3'
miRNA:   3'- -GGCAUgAGC-Cua------------GCGUGGCGGGC--UCG- -5'
23391 5' -57.4 NC_005259.1 + 62924 0.72 0.388806
Target:  5'- cUCGUcCUCGGuuugcggcUCGCGCUGCugCCGGGCa -3'
miRNA:   3'- -GGCAuGAGCCu-------AGCGUGGCG--GGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.