Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 1362 | 0.69 | 0.550368 |
Target: 5'- aCUGggccGCUCGc--CGCGCCGCCCGcgaGGCc -3' miRNA: 3'- -GGCa---UGAGCcuaGCGUGGCGGGC---UCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 1432 | 0.76 | 0.225534 |
Target: 5'- gUCGUGCUCGGGcUgGCACUGCUCGcguGCu -3' miRNA: 3'- -GGCAUGAGCCU-AgCGUGGCGGGCu--CG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 3128 | 0.71 | 0.406208 |
Target: 5'- aCCGUggGCagCGGAcgGCACCGCCCGuGg -3' miRNA: 3'- -GGCA--UGa-GCCUagCGUGGCGGGCuCg -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 3267 | 0.67 | 0.657712 |
Target: 5'- uCC-UGCUCGGGUgguuuccCGuCGCCGCCucgccggucccucggCGAGCg -3' miRNA: 3'- -GGcAUGAGCCUA-------GC-GUGGCGG---------------GCUCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 4425 | 0.71 | 0.397446 |
Target: 5'- aCCGcGCgccCGaGGUCGaGCCGCCCGuGCg -3' miRNA: 3'- -GGCaUGa--GC-CUAGCgUGGCGGGCuCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 7845 | 0.68 | 0.560641 |
Target: 5'- cCCuUACgggaCGGAcCGCGCCgaccccggugGCCCGAGUg -3' miRNA: 3'- -GGcAUGa---GCCUaGCGUGG----------CGGGCUCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 8069 | 0.67 | 0.623128 |
Target: 5'- gCCG-ACaUCGaGAUCGUGCCGCgCUG-GCg -3' miRNA: 3'- -GGCaUG-AGC-CUAGCGUGGCG-GGCuCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 8861 | 0.66 | 0.735905 |
Target: 5'- gCGUGCcCGc--CGCcugccgcacccacGCCGCCUGAGCg -3' miRNA: 3'- gGCAUGaGCcuaGCG-------------UGGCGGGCUCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 9380 | 0.66 | 0.7167 |
Target: 5'- gCGaGCUCGGAgagcaaCGCACgcgCGCCCcGGUa -3' miRNA: 3'- gGCaUGAGCCUa-----GCGUG---GCGGGcUCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 10558 | 0.76 | 0.214487 |
Target: 5'- aUGUGCUCGaucaAUCGCGCCGCCuCGAcgGCg -3' miRNA: 3'- gGCAUGAGCc---UAGCGUGGCGG-GCU--CG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 10822 | 0.69 | 0.550368 |
Target: 5'- aCgGUGCcgaUGGAcaCGCccACCGCCUGAGCa -3' miRNA: 3'- -GgCAUGa--GCCUa-GCG--UGGCGGGCUCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 12195 | 0.72 | 0.372734 |
Target: 5'- aCCGUGgUCGuGuagagaugcaccggCGCACCGCCCGcuGGCc -3' miRNA: 3'- -GGCAUgAGC-Cua------------GCGUGGCGGGC--UCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 12988 | 0.71 | 0.418677 |
Target: 5'- aCCGUggugcucgcguucgcACUCGGcuaCGcCGCCGCCCG-GCc -3' miRNA: 3'- -GGCA---------------UGAGCCua-GC-GUGGCGGGCuCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 13471 | 0.66 | 0.736906 |
Target: 5'- -gGUGCUCac--CGCGCUGCCCGAc- -3' miRNA: 3'- ggCAUGAGccuaGCGUGGCGGGCUcg -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 14176 | 0.67 | 0.623128 |
Target: 5'- gCCGgg--CGGGUgGCaACCGCucacccCCGAGCa -3' miRNA: 3'- -GGCaugaGCCUAgCG-UGGCG------GGCUCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 14725 | 0.66 | 0.695159 |
Target: 5'- gCCGcGCUCGucgccgaGAUguaCGCGCUGgCCGGGCc -3' miRNA: 3'- -GGCaUGAGC-------CUA---GCGUGGCgGGCUCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 14857 | 0.9 | 0.023045 |
Target: 5'- gUCGUGCUCGcGAgguUCGCGCUGCCCGAGCc -3' miRNA: 3'- -GGCAUGAGC-CU---AGCGUGGCGGGCUCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 16232 | 0.69 | 0.519924 |
Target: 5'- gCCGaACgcacccCGGugcugCGCACCGaCCGAGCa -3' miRNA: 3'- -GGCaUGa-----GCCua---GCGUGGCgGGCUCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 16999 | 0.72 | 0.347498 |
Target: 5'- aCGUGCUCGGAUCaacccccauCACCGCCauccucGGCg -3' miRNA: 3'- gGCAUGAGCCUAGc--------GUGGCGGgc----UCG- -5' |
|||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 18643 | 0.72 | 0.388806 |
Target: 5'- cCCGUuCUCGcAUUGgcgcgauaugcCGCCGCCCGAGUa -3' miRNA: 3'- -GGCAuGAGCcUAGC-----------GUGGCGGGCUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home