miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23391 5' -57.4 NC_005259.1 + 1362 0.69 0.550368
Target:  5'- aCUGggccGCUCGc--CGCGCCGCCCGcgaGGCc -3'
miRNA:   3'- -GGCa---UGAGCcuaGCGUGGCGGGC---UCG- -5'
23391 5' -57.4 NC_005259.1 + 1432 0.76 0.225534
Target:  5'- gUCGUGCUCGGGcUgGCACUGCUCGcguGCu -3'
miRNA:   3'- -GGCAUGAGCCU-AgCGUGGCGGGCu--CG- -5'
23391 5' -57.4 NC_005259.1 + 3128 0.71 0.406208
Target:  5'- aCCGUggGCagCGGAcgGCACCGCCCGuGg -3'
miRNA:   3'- -GGCA--UGa-GCCUagCGUGGCGGGCuCg -5'
23391 5' -57.4 NC_005259.1 + 3267 0.67 0.657712
Target:  5'- uCC-UGCUCGGGUgguuuccCGuCGCCGCCucgccggucccucggCGAGCg -3'
miRNA:   3'- -GGcAUGAGCCUA-------GC-GUGGCGG---------------GCUCG- -5'
23391 5' -57.4 NC_005259.1 + 4425 0.71 0.397446
Target:  5'- aCCGcGCgccCGaGGUCGaGCCGCCCGuGCg -3'
miRNA:   3'- -GGCaUGa--GC-CUAGCgUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 7845 0.68 0.560641
Target:  5'- cCCuUACgggaCGGAcCGCGCCgaccccggugGCCCGAGUg -3'
miRNA:   3'- -GGcAUGa---GCCUaGCGUGG----------CGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 8069 0.67 0.623128
Target:  5'- gCCG-ACaUCGaGAUCGUGCCGCgCUG-GCg -3'
miRNA:   3'- -GGCaUG-AGC-CUAGCGUGGCG-GGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 8861 0.66 0.735905
Target:  5'- gCGUGCcCGc--CGCcugccgcacccacGCCGCCUGAGCg -3'
miRNA:   3'- gGCAUGaGCcuaGCG-------------UGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 9380 0.66 0.7167
Target:  5'- gCGaGCUCGGAgagcaaCGCACgcgCGCCCcGGUa -3'
miRNA:   3'- gGCaUGAGCCUa-----GCGUG---GCGGGcUCG- -5'
23391 5' -57.4 NC_005259.1 + 10558 0.76 0.214487
Target:  5'- aUGUGCUCGaucaAUCGCGCCGCCuCGAcgGCg -3'
miRNA:   3'- gGCAUGAGCc---UAGCGUGGCGG-GCU--CG- -5'
23391 5' -57.4 NC_005259.1 + 10822 0.69 0.550368
Target:  5'- aCgGUGCcgaUGGAcaCGCccACCGCCUGAGCa -3'
miRNA:   3'- -GgCAUGa--GCCUa-GCG--UGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 12195 0.72 0.372734
Target:  5'- aCCGUGgUCGuGuagagaugcaccggCGCACCGCCCGcuGGCc -3'
miRNA:   3'- -GGCAUgAGC-Cua------------GCGUGGCGGGC--UCG- -5'
23391 5' -57.4 NC_005259.1 + 12988 0.71 0.418677
Target:  5'- aCCGUggugcucgcguucgcACUCGGcuaCGcCGCCGCCCG-GCc -3'
miRNA:   3'- -GGCA---------------UGAGCCua-GC-GUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 13471 0.66 0.736906
Target:  5'- -gGUGCUCac--CGCGCUGCCCGAc- -3'
miRNA:   3'- ggCAUGAGccuaGCGUGGCGGGCUcg -5'
23391 5' -57.4 NC_005259.1 + 14176 0.67 0.623128
Target:  5'- gCCGgg--CGGGUgGCaACCGCucacccCCGAGCa -3'
miRNA:   3'- -GGCaugaGCCUAgCG-UGGCG------GGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 14725 0.66 0.695159
Target:  5'- gCCGcGCUCGucgccgaGAUguaCGCGCUGgCCGGGCc -3'
miRNA:   3'- -GGCaUGAGC-------CUA---GCGUGGCgGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 14857 0.9 0.023045
Target:  5'- gUCGUGCUCGcGAgguUCGCGCUGCCCGAGCc -3'
miRNA:   3'- -GGCAUGAGC-CU---AGCGUGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 16232 0.69 0.519924
Target:  5'- gCCGaACgcacccCGGugcugCGCACCGaCCGAGCa -3'
miRNA:   3'- -GGCaUGa-----GCCua---GCGUGGCgGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 16999 0.72 0.347498
Target:  5'- aCGUGCUCGGAUCaacccccauCACCGCCauccucGGCg -3'
miRNA:   3'- gGCAUGAGCCUAGc--------GUGGCGGgc----UCG- -5'
23391 5' -57.4 NC_005259.1 + 18643 0.72 0.388806
Target:  5'- cCCGUuCUCGcAUUGgcgcgauaugcCGCCGCCCGAGUa -3'
miRNA:   3'- -GGCAuGAGCcUAGC-----------GUGGCGGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.