Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23391 | 5' | -57.4 | NC_005259.1 | + | 19849 | 0.66 | 0.726846 |
Target: 5'- gCCGcGCUCGGuguggcgcUCGCGCC-CgCCGGGa -3' miRNA: 3'- -GGCaUGAGCCu-------AGCGUGGcG-GGCUCg -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 20458 | 0.79 | 0.1472 |
Target: 5'- gCCGgggugGCUCGGAugaccgccgucgaccUCGaCACCGCCCG-GCa -3' miRNA: 3'- -GGCa----UGAGCCU---------------AGC-GUGGCGGGCuCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 20523 | 0.73 | 0.32426 |
Target: 5'- cCCGaGCaCGGGU-GCGCUGCCCGcAGCg -3' miRNA: 3'- -GGCaUGaGCCUAgCGUGGCGGGC-UCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 20548 | 0.68 | 0.602186 |
Target: 5'- nCGUGg-UGGAUCaGCACCGacCCCGAGa -3' miRNA: 3'- gGCAUgaGCCUAG-CGUGGC--GGGCUCg -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 22981 | 0.68 | 0.581337 |
Target: 5'- cUCGUGCcCGGuGUCGaCGCCG-CCGAGg -3' miRNA: 3'- -GGCAUGaGCC-UAGC-GUGGCgGGCUCg -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 23871 | 0.71 | 0.406208 |
Target: 5'- aCCGag--UGGAUgCGCuauccgcuGCCGCCCGAGCc -3' miRNA: 3'- -GGCaugaGCCUA-GCG--------UGGCGGGCUCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 26408 | 0.66 | 0.730881 |
Target: 5'- gCCGgGCgcggCGGugccgccguagaaCGCACCGC-CGAGCg -3' miRNA: 3'- -GGCaUGa---GCCua-----------GCGUGGCGgGCUCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 26780 | 0.7 | 0.48042 |
Target: 5'- gCCGgugcCUCGGAacaccagCGcCGCCGCCCGguuGGCc -3' miRNA: 3'- -GGCau--GAGCCUa------GC-GUGGCGGGC---UCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 26832 | 0.7 | 0.461222 |
Target: 5'- -gGUGC-CGGggCGguCUGCUCGGGCa -3' miRNA: 3'- ggCAUGaGCCuaGCguGGCGGGCUCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 27355 | 0.66 | 0.706479 |
Target: 5'- gCCGUACU--GAUCGgGCUugguGCCCG-GCa -3' miRNA: 3'- -GGCAUGAgcCUAGCgUGG----CGGGCuCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 28212 | 0.68 | 0.560641 |
Target: 5'- uCCGUAgaCGG-UCGUGCCGCCaccgucGGCg -3' miRNA: 3'- -GGCAUgaGCCuAGCGUGGCGGgc----UCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 29847 | 0.67 | 0.663984 |
Target: 5'- uCCGUucGCUCGcuGUCGggcaucgaacugcCACCGCCCGAuGUc -3' miRNA: 3'- -GGCA--UGAGCc-UAGC-------------GUGGCGGGCU-CG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 31718 | 0.66 | 0.726846 |
Target: 5'- gCCGgucuuCUCuGAggugacCGCGCCuGCCgCGAGCg -3' miRNA: 3'- -GGCau---GAGcCUa-----GCGUGG-CGG-GCUCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 34884 | 0.71 | 0.397446 |
Target: 5'- aCCGgggugcCUCGGGcaggaCGgGCCGCUCGGGCa -3' miRNA: 3'- -GGCau----GAGCCUa----GCgUGGCGGGCUCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 35185 | 0.68 | 0.581337 |
Target: 5'- gCGUGC-CGGugagcagcacCGUGCCGCCUGAGg -3' miRNA: 3'- gGCAUGaGCCua--------GCGUGGCGGGCUCg -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 35694 | 0.67 | 0.633613 |
Target: 5'- gCCGUGCcCGGcgagggGUCGCugacgagguauCCGCCCGAc- -3' miRNA: 3'- -GGCAUGaGCC------UAGCGu----------GGCGGGCUcg -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 36968 | 0.67 | 0.64829 |
Target: 5'- aCCGc-CUCGGcccgcaccgccgaacGUCGCACCguucuuGCCCGcGCg -3' miRNA: 3'- -GGCauGAGCC---------------UAGCGUGG------CGGGCuCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 37239 | 0.7 | 0.469811 |
Target: 5'- cCCGUGC-CGGAuuggcugccgccgUUGCcaggcuugagGCCGCCCG-GCa -3' miRNA: 3'- -GGCAUGaGCCU-------------AGCG----------UGGCGGGCuCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 38940 | 0.68 | 0.570967 |
Target: 5'- gCUGUGCcCGGugcCGCuGCCGCCgaGAGCc -3' miRNA: 3'- -GGCAUGaGCCua-GCG-UGGCGGg-CUCG- -5' |
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23391 | 5' | -57.4 | NC_005259.1 | + | 39206 | 0.7 | 0.455542 |
Target: 5'- uCCGUGCUUGGAUgcccugccacaaCGCAUUgaggcccucgacaagGCCCGAGa -3' miRNA: 3'- -GGCAUGAGCCUA------------GCGUGG---------------CGGGCUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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