miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23391 5' -57.4 NC_005259.1 + 68777 0.66 0.685847
Target:  5'- gUGUACUUGagcaGGUCGUA-CGCCgGGGCg -3'
miRNA:   3'- gGCAUGAGC----CUAGCGUgGCGGgCUCG- -5'
23391 5' -57.4 NC_005259.1 + 68282 0.66 0.735905
Target:  5'- aCCGUcCUCgccccauacaucgGGAUCGgGCgCGUCCG-GCg -3'
miRNA:   3'- -GGCAuGAG-------------CCUAGCgUG-GCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 67962 0.67 0.663984
Target:  5'- uUGUGCUguagcgcgcgcagCGGcGUgGcCACCGCCgCGAGCg -3'
miRNA:   3'- gGCAUGA-------------GCC-UAgC-GUGGCGG-GCUCG- -5'
23391 5' -57.4 NC_005259.1 + 66630 0.67 0.644098
Target:  5'- cUCGUcccuggccaccGCUCGGAUUGCuGCCGgUCG-GCg -3'
miRNA:   3'- -GGCA-----------UGAGCCUAGCG-UGGCgGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 64421 0.71 0.41509
Target:  5'- gCCGUGag-GGAUCGCcgacgaGCUGCCgGGGCg -3'
miRNA:   3'- -GGCAUgagCCUAGCG------UGGCGGgCUCG- -5'
23391 5' -57.4 NC_005259.1 + 62924 0.72 0.388806
Target:  5'- cUCGUcCUCGGuuugcggcUCGCGCUGCugCCGGGCa -3'
miRNA:   3'- -GGCAuGAGCCu-------AGCGUGGCG--GGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 61922 0.67 0.644098
Target:  5'- gUCGUcggcaGCUCGGucucUCGCGCgggUGCCgGGGCc -3'
miRNA:   3'- -GGCA-----UGAGCCu---AGCGUG---GCGGgCUCG- -5'
23391 5' -57.4 NC_005259.1 + 61091 0.68 0.591746
Target:  5'- gUCGgcCUCGGGcUUGUugaGCCaguaGCCCGAGCc -3'
miRNA:   3'- -GGCauGAGCCU-AGCG---UGG----CGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 60532 0.67 0.654573
Target:  5'- gCCGgGC-CGGGaCGCAgCCGCUCGucGGCa -3'
miRNA:   3'- -GGCaUGaGCCUaGCGU-GGCGGGC--UCG- -5'
23391 5' -57.4 NC_005259.1 + 58810 0.66 0.736906
Target:  5'- cUCGg---CGGGcUCGCGCUGCUCG-GCa -3'
miRNA:   3'- -GGCaugaGCCU-AGCGUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 58567 0.68 0.591746
Target:  5'- gCGguuggGC-CGGAUCGCGgCGCggcugCCGGGCc -3'
miRNA:   3'- gGCa----UGaGCCUAGCGUgGCG-----GGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 52923 0.67 0.674415
Target:  5'- gCCG-ACUCGauggccuGGUCGCucaaCGCCCGuaAGCa -3'
miRNA:   3'- -GGCaUGAGC-------CUAGCGug--GCGGGC--UCG- -5'
23391 5' -57.4 NC_005259.1 + 48049 0.68 0.581337
Target:  5'- cCCGgugGCcacggCGGGUaGCGCCGCCgcgcccUGAGCg -3'
miRNA:   3'- -GGCa--UGa----GCCUAgCGUGGCGG------GCUCG- -5'
23391 5' -57.4 NC_005259.1 + 46870 0.7 0.48042
Target:  5'- gUCGagGCUUGaAUCGCGCCGCCgcccgcgaUGAGCg -3'
miRNA:   3'- -GGCa-UGAGCcUAGCGUGGCGG--------GCUCG- -5'
23391 5' -57.4 NC_005259.1 + 46573 0.69 0.519924
Target:  5'- gUCGcgGCgUCGac-CGCGCCGCCCGAGg -3'
miRNA:   3'- -GGCa-UG-AGCcuaGCGUGGCGGGCUCg -5'
23391 5' -57.4 NC_005259.1 + 46358 0.7 0.48042
Target:  5'- uCUGgGC-CGcGAUgGCACCGCCCG-GCc -3'
miRNA:   3'- -GGCaUGaGC-CUAgCGUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 45328 0.71 0.41509
Target:  5'- gCCGaACUgcgUGGccUGCGCCGCCUGGGCc -3'
miRNA:   3'- -GGCaUGA---GCCuaGCGUGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 45007 0.68 0.570967
Target:  5'- gCCGaccGC-CGGGgcCGCGCCGCCCugcuucauGAGCu -3'
miRNA:   3'- -GGCa--UGaGCCUa-GCGUGGCGGG--------CUCG- -5'
23391 5' -57.4 NC_005259.1 + 44228 0.73 0.339622
Target:  5'- uUCGaGCUCGcccgcCGCGCCGCCCGcGCg -3'
miRNA:   3'- -GGCaUGAGCcua--GCGUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 42034 0.68 0.570967
Target:  5'- -gGUugUCGGGUCGaCugCGCUguccucggggUGGGCg -3'
miRNA:   3'- ggCAugAGCCUAGC-GugGCGG----------GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.