miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23391 5' -57.4 NC_005259.1 + 66630 0.67 0.644098
Target:  5'- cUCGUcccuggccaccGCUCGGAUUGCuGCCGgUCG-GCg -3'
miRNA:   3'- -GGCA-----------UGAGCCUAGCG-UGGCgGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 35694 0.67 0.633613
Target:  5'- gCCGUGCcCGGcgagggGUCGCugacgagguauCCGCCCGAc- -3'
miRNA:   3'- -GGCAUGaGCC------UAGCGu----------GGCGGGCUcg -5'
23391 5' -57.4 NC_005259.1 + 8069 0.67 0.623128
Target:  5'- gCCG-ACaUCGaGAUCGUGCCGCgCUG-GCg -3'
miRNA:   3'- -GGCaUG-AGC-CUAGCGUGGCG-GGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 14176 0.67 0.623128
Target:  5'- gCCGgg--CGGGUgGCaACCGCucacccCCGAGCa -3'
miRNA:   3'- -GGCaugaGCCUAgCG-UGGCG------GGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 20548 0.68 0.602186
Target:  5'- nCGUGg-UGGAUCaGCACCGacCCCGAGa -3'
miRNA:   3'- gGCAUgaGCCUAG-CGUGGC--GGGCUCg -5'
23391 5' -57.4 NC_005259.1 + 58567 0.68 0.591746
Target:  5'- gCGguuggGC-CGGAUCGCGgCGCggcugCCGGGCc -3'
miRNA:   3'- gGCa----UGaGCCUAGCGUgGCG-----GGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 61091 0.68 0.591746
Target:  5'- gUCGgcCUCGGGcUUGUugaGCCaguaGCCCGAGCc -3'
miRNA:   3'- -GGCauGAGCCU-AGCG---UGG----CGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 48049 0.68 0.581337
Target:  5'- cCCGgugGCcacggCGGGUaGCGCCGCCgcgcccUGAGCg -3'
miRNA:   3'- -GGCa--UGa----GCCUAgCGUGGCGG------GCUCG- -5'
23391 5' -57.4 NC_005259.1 + 22981 0.68 0.581337
Target:  5'- cUCGUGCcCGGuGUCGaCGCCG-CCGAGg -3'
miRNA:   3'- -GGCAUGaGCC-UAGC-GUGGCgGGCUCg -5'
23391 5' -57.4 NC_005259.1 + 35185 0.68 0.581337
Target:  5'- gCGUGC-CGGugagcagcacCGUGCCGCCUGAGg -3'
miRNA:   3'- gGCAUGaGCCua--------GCGUGGCGGGCUCg -5'
23391 5' -57.4 NC_005259.1 + 45007 0.68 0.570967
Target:  5'- gCCGaccGC-CGGGgcCGCGCCGCCCugcuucauGAGCu -3'
miRNA:   3'- -GGCa--UGaGCCUa-GCGUGGCGGG--------CUCG- -5'
23391 5' -57.4 NC_005259.1 + 38940 0.68 0.570967
Target:  5'- gCUGUGCcCGGugcCGCuGCCGCCgaGAGCc -3'
miRNA:   3'- -GGCAUGaGCCua-GCG-UGGCGGg-CUCG- -5'
23391 5' -57.4 NC_005259.1 + 42034 0.68 0.570967
Target:  5'- -gGUugUCGGGUCGaCugCGCUguccucggggUGGGCg -3'
miRNA:   3'- ggCAugAGCCUAGC-GugGCGG----------GCUCG- -5'
23391 5' -57.4 NC_005259.1 + 7845 0.68 0.560641
Target:  5'- cCCuUACgggaCGGAcCGCGCCgaccccggugGCCCGAGUg -3'
miRNA:   3'- -GGcAUGa---GCCUaGCGUGG----------CGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 28212 0.68 0.560641
Target:  5'- uCCGUAgaCGG-UCGUGCCGCCaccgucGGCg -3'
miRNA:   3'- -GGCAUgaGCCuAGCGUGGCGGgc----UCG- -5'
23391 5' -57.4 NC_005259.1 + 10822 0.69 0.550368
Target:  5'- aCgGUGCcgaUGGAcaCGCccACCGCCUGAGCa -3'
miRNA:   3'- -GgCAUGa--GCCUa-GCG--UGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 1362 0.69 0.550368
Target:  5'- aCUGggccGCUCGc--CGCGCCGCCCGcgaGGCc -3'
miRNA:   3'- -GGCa---UGAGCcuaGCGUGGCGGGC---UCG- -5'
23391 5' -57.4 NC_005259.1 + 46573 0.69 0.519924
Target:  5'- gUCGcgGCgUCGac-CGCGCCGCCCGAGg -3'
miRNA:   3'- -GGCa-UG-AGCcuaGCGUGGCGGGCUCg -5'
23391 5' -57.4 NC_005259.1 + 16232 0.69 0.519924
Target:  5'- gCCGaACgcacccCGGugcugCGCACCGaCCGAGCa -3'
miRNA:   3'- -GGCaUGa-----GCCua---GCGUGGCgGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 46870 0.7 0.48042
Target:  5'- gUCGagGCUUGaAUCGCGCCGCCgcccgcgaUGAGCg -3'
miRNA:   3'- -GGCa-UGAGCcUAGCGUGGCGG--------GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.