miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23397 5' -57.3 NC_005259.1 + 60841 0.66 0.721616
Target:  5'- aCCau-CGCGAGGUCGCGagacucgcggguCGCGUUGAa -3'
miRNA:   3'- -GGcacGUGCUCCAGUGC------------GCGCAGCUc -5'
23397 5' -57.3 NC_005259.1 + 65704 0.67 0.679358
Target:  5'- gCCGaGUaggACGAGGUCACGCccaaggcgaguugGgGUCGAc -3'
miRNA:   3'- -GGCaCG---UGCUCCAGUGCG-------------CgCAGCUc -5'
23397 5' -57.3 NC_005259.1 + 40370 0.67 0.669966
Target:  5'- gCCGaggGCAUGAGGUCuuccaucgacacGgGCGCGUuCGGa -3'
miRNA:   3'- -GGCa--CGUGCUCCAG------------UgCGCGCA-GCUc -5'
23397 5' -57.3 NC_005259.1 + 46557 0.67 0.669966
Target:  5'- gCCGaccGCGCcuauGGUCGCG-GCGUCGAc -3'
miRNA:   3'- -GGCa--CGUGcu--CCAGUGCgCGCAGCUc -5'
23397 5' -57.3 NC_005259.1 + 41307 0.67 0.668921
Target:  5'- uCCGUgaGCGCGAGGUCgaccucgaaaaggGCGgUGcCGUCGGa -3'
miRNA:   3'- -GGCA--CGUGCUCCAG-------------UGC-GC-GCAGCUc -5'
23397 5' -57.3 NC_005259.1 + 32484 0.67 0.658453
Target:  5'- gCCGgGCGCGAGGUgguucuguaugaaCAcCGUGagguaGUCGAGg -3'
miRNA:   3'- -GGCaCGUGCUCCA-------------GU-GCGCg----CAGCUC- -5'
23397 5' -57.3 NC_005259.1 + 48436 0.67 0.656356
Target:  5'- aCCGagGCGCGAGGcagCGgcagcgcguuccacCGCGCGcCGGGu -3'
miRNA:   3'- -GGCa-CGUGCUCCa--GU--------------GCGCGCaGCUC- -5'
23397 5' -57.3 NC_005259.1 + 59396 0.67 0.628002
Target:  5'- uCCGcGCGCGAGcGugaccUCGCGCaugGCGUCGGc -3'
miRNA:   3'- -GGCaCGUGCUC-C-----AGUGCG---CGCAGCUc -5'
23397 5' -57.3 NC_005259.1 + 51534 0.68 0.617497
Target:  5'- cUCGUGCACGGGGccgggcaagugCACGa-CGUUGGGg -3'
miRNA:   3'- -GGCACGUGCUCCa----------GUGCgcGCAGCUC- -5'
23397 5' -57.3 NC_005259.1 + 27504 0.68 0.616447
Target:  5'- aCGcGC-CGAGGUCgacguguccgcacACGC-CGUCGAGg -3'
miRNA:   3'- gGCaCGuGCUCCAG-------------UGCGcGCAGCUC- -5'
23397 5' -57.3 NC_005259.1 + 67904 0.68 0.607004
Target:  5'- gCUGUGggucucgGCGAGGUCAaGCGCGUaggucgCGAGg -3'
miRNA:   3'- -GGCACg------UGCUCCAGUgCGCGCA------GCUC- -5'
23397 5' -57.3 NC_005259.1 + 14857 0.68 0.586085
Target:  5'- gUCGUGCucGCGAGGuUCGCGCuGCc-CGAGc -3'
miRNA:   3'- -GGCACG--UGCUCC-AGUGCG-CGcaGCUC- -5'
23397 5' -57.3 NC_005259.1 + 67428 0.69 0.554988
Target:  5'- -gGUGC-CGGGcUCACgcuugaGCGCGUCGGGg -3'
miRNA:   3'- ggCACGuGCUCcAGUG------CGCGCAGCUC- -5'
23397 5' -57.3 NC_005259.1 + 55760 0.69 0.544725
Target:  5'- aCCGUGCGC-AGc-CGCGUacGCGUCGAGc -3'
miRNA:   3'- -GGCACGUGcUCcaGUGCG--CGCAGCUC- -5'
23397 5' -57.3 NC_005259.1 + 35585 0.7 0.498408
Target:  5'- cCCGuUGUAgcUGAGGUCgggugcguccuggccACGCuGCGUCGAGu -3'
miRNA:   3'- -GGC-ACGU--GCUCCAG---------------UGCG-CGCAGCUC- -5'
23397 5' -57.3 NC_005259.1 + 31905 0.7 0.49446
Target:  5'- cCCG-GCGCGAGcgccucaaucucGUCACGCacucgGgGUCGAGg -3'
miRNA:   3'- -GGCaCGUGCUC------------CAGUGCG-----CgCAGCUC- -5'
23397 5' -57.3 NC_005259.1 + 27847 0.7 0.484655
Target:  5'- ---gGcCGCGAGGUCGCGCGcCGUaCGAc -3'
miRNA:   3'- ggcaC-GUGCUCCAGUGCGC-GCA-GCUc -5'
23397 5' -57.3 NC_005259.1 + 57063 0.7 0.484655
Target:  5'- aCCGUG-AUcGGGUCGaaCGCGUCGAGg -3'
miRNA:   3'- -GGCACgUGcUCCAGUgcGCGCAGCUC- -5'
23397 5' -57.3 NC_005259.1 + 31072 0.7 0.465332
Target:  5'- aUCGgGUcgGCGAGGUUcccgaGCGCGUCGGGg -3'
miRNA:   3'- -GGCaCG--UGCUCCAGug---CGCGCAGCUC- -5'
23397 5' -57.3 NC_005259.1 + 42945 0.7 0.465332
Target:  5'- gCCGUGgGCGAGGcCGC-CGuUGUCGAa -3'
miRNA:   3'- -GGCACgUGCUCCaGUGcGC-GCAGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.