Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 5063 | 0.72 | 0.508604 |
Target: 5'- uCGAGaUCGUggGCCGGGU-CGACGGGc -3' miRNA: 3'- uGCUCgAGCAa-CGGCUCAuGCUGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 7041 | 0.66 | 0.847551 |
Target: 5'- gGCGGGguuuUUCGUUGCgCGAGauccuguCGACGGGc -3' miRNA: 3'- -UGCUC----GAGCAACG-GCUCau-----GCUGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 7317 | 0.74 | 0.410798 |
Target: 5'- cCGAGUUcaccgcCGUcGCCGAGUACGuCGAGg -3' miRNA: 3'- uGCUCGA------GCAaCGGCUCAUGCuGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 8431 | 0.73 | 0.478124 |
Target: 5'- uGCGAuGCUCGUUGCCGguggucucGGUGUGGuCGAGg -3' miRNA: 3'- -UGCU-CGAGCAACGGC--------UCAUGCU-GCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 10434 | 0.68 | 0.711919 |
Target: 5'- gGCGAGCUCGacaUCGAGUGgcuCGACGGc -3' miRNA: 3'- -UGCUCGAGCaacGGCUCAU---GCUGCUc -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 11406 | 0.69 | 0.701306 |
Target: 5'- aGCGguuucGGCUCGUgGCCG-GUGCaACGGGg -3' miRNA: 3'- -UGC-----UCGAGCAaCGGCuCAUGcUGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 14546 | 0.66 | 0.838982 |
Target: 5'- cCGAGUUCGUccggcagGCCGAGcggggacCGGCGAa -3' miRNA: 3'- uGCUCGAGCAa------CGGCUCau-----GCUGCUc -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 17520 | 0.66 | 0.838982 |
Target: 5'- cCGAGCUCGUggGCacacAGcgACGGCGGGc -3' miRNA: 3'- uGCUCGAGCAa-CGgc--UCa-UGCUGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 19201 | 0.73 | 0.42944 |
Target: 5'- aGCGAGCUCGUggUGCgGGcgGCGACGuGg -3' miRNA: 3'- -UGCUCGAGCA--ACGgCUcaUGCUGCuC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 21216 | 0.7 | 0.625769 |
Target: 5'- cCGAGCUCauccgaGCCGAGUACGccucggcagcgcGCGGGu -3' miRNA: 3'- uGCUCGAGcaa---CGGCUCAUGC------------UGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 26381 | 0.67 | 0.806452 |
Target: 5'- gGCGAGCcUGUUgcucgcgauuccgacGCCGGGcGCGGCGGu -3' miRNA: 3'- -UGCUCGaGCAA---------------CGGCUCaUGCUGCUc -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 26501 | 0.66 | 0.821221 |
Target: 5'- cGCGAGCUCGccGCC-----CGGCGAGa -3' miRNA: 3'- -UGCUCGAGCaaCGGcucauGCUGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 28755 | 0.7 | 0.593281 |
Target: 5'- cCGAGCgugagaUCGUcGCCG-GUGcCGACGAGg -3' miRNA: 3'- uGCUCG------AGCAaCGGCuCAU-GCUGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 28967 | 0.7 | 0.625769 |
Target: 5'- cCGAGgUCGgUGCCGAGgcCG-CGAGc -3' miRNA: 3'- uGCUCgAGCaACGGCUCauGCuGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 31168 | 0.67 | 0.793155 |
Target: 5'- uCGAGCUCGcccuugaGCC-AGU-CGGCGAGg -3' miRNA: 3'- uGCUCGAGCaa-----CGGcUCAuGCUGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 33363 | 0.68 | 0.757563 |
Target: 5'- gGCGAGgUCaugacucuccuaccgGUccGCCGAGcGCGACGAGc -3' miRNA: 3'- -UGCUCgAG---------------CAa-CGGCUCaUGCUGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 42443 | 0.68 | 0.757563 |
Target: 5'- aGCGuGUUCGgcguccaacagucGCCGAcUACGGCGAGg -3' miRNA: 3'- -UGCuCGAGCaa-----------CGGCUcAUGCUGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 44297 | 0.66 | 0.838982 |
Target: 5'- cGCGAGCggGUUGCCcucuuUGACGAGc -3' miRNA: 3'- -UGCUCGagCAACGGcucauGCUGCUC- -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 44358 | 0.69 | 0.679894 |
Target: 5'- cACG-GCUCGUUGCCGAGgcuCGcCa-- -3' miRNA: 3'- -UGCuCGAGCAACGGCUCau-GCuGcuc -5' |
|||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 45957 | 0.68 | 0.753499 |
Target: 5'- cACGuuGCcgaCGUUGCCGAGcuUGGCGAGu -3' miRNA: 3'- -UGCu-CGa--GCAACGGCUCauGCUGCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home