Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23402 | 3' | -54.1 | NC_005259.1 | + | 67218 | 0.7 | 0.614922 |
Target: 5'- gGCGGGgUCGaUGCCGAccACGGCGGu -3' miRNA: 3'- -UGCUCgAGCaACGGCUcaUGCUGCUc -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 65695 | 0.79 | 0.212203 |
Target: 5'- gACGAGCgg---GCCGAGUAgGACGAGg -3' miRNA: 3'- -UGCUCGagcaaCGGCUCAUgCUGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 62645 | 0.67 | 0.812046 |
Target: 5'- uGCGuAGCuucUCGUUGUCGAGacCGAgCGAGg -3' miRNA: 3'- -UGC-UCG---AGCAACGGCUCauGCU-GCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 57233 | 0.68 | 0.76362 |
Target: 5'- -gGGGUcggagauccacgUCGUUGCCGGgaacaguccGUugGGCGAGg -3' miRNA: 3'- ugCUCG------------AGCAACGGCU---------CAugCUGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 56673 | 0.67 | 0.812046 |
Target: 5'- cACGGGCUCGUUGCgCcacccaUACGgcuGCGAGg -3' miRNA: 3'- -UGCUCGAGCAACG-Gcuc---AUGC---UGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 53534 | 0.68 | 0.711919 |
Target: 5'- cACGGGCUCGgUGCCcGGUGuCGGCu-- -3' miRNA: 3'- -UGCUCGAGCaACGGcUCAU-GCUGcuc -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 51464 | 0.66 | 0.847551 |
Target: 5'- -aGAGCUUGUUGCCcu---CGGCGAc -3' miRNA: 3'- ugCUCGAGCAACGGcucauGCUGCUc -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 50983 | 0.67 | 0.802687 |
Target: 5'- gGCGAGCgg--UGUCGAGUcacCGGCGAa -3' miRNA: 3'- -UGCUCGagcaACGGCUCAu--GCUGCUc -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 47067 | 0.66 | 0.847551 |
Target: 5'- gUGAGCgaggCGagcGCCGAG-ACGAUGGGc -3' miRNA: 3'- uGCUCGa---GCaa-CGGCUCaUGCUGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 45957 | 0.68 | 0.753499 |
Target: 5'- cACGuuGCcgaCGUUGCCGAGcuUGGCGAGu -3' miRNA: 3'- -UGCu-CGa--GCAACGGCUCauGCUGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 44358 | 0.69 | 0.679894 |
Target: 5'- cACG-GCUCGUUGCCGAGgcuCGcCa-- -3' miRNA: 3'- -UGCuCGAGCAACGGCUCau-GCuGcuc -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 44297 | 0.66 | 0.838982 |
Target: 5'- cGCGAGCggGUUGCCcucuuUGACGAGc -3' miRNA: 3'- -UGCUCGagCAACGGcucauGCUGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 42443 | 0.68 | 0.757563 |
Target: 5'- aGCGuGUUCGgcguccaacagucGCCGAcUACGGCGAGg -3' miRNA: 3'- -UGCuCGAGCaa-----------CGGCUcAUGCUGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 33363 | 0.68 | 0.757563 |
Target: 5'- gGCGAGgUCaugacucuccuaccgGUccGCCGAGcGCGACGAGc -3' miRNA: 3'- -UGCUCgAG---------------CAa-CGGCUCaUGCUGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 31168 | 0.67 | 0.793155 |
Target: 5'- uCGAGCUCGcccuugaGCC-AGU-CGGCGAGg -3' miRNA: 3'- uGCUCGAGCaa-----CGGcUCAuGCUGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 28967 | 0.7 | 0.625769 |
Target: 5'- cCGAGgUCGgUGCCGAGgcCG-CGAGc -3' miRNA: 3'- uGCUCgAGCaACGGCUCauGCuGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 28755 | 0.7 | 0.593281 |
Target: 5'- cCGAGCgugagaUCGUcGCCG-GUGcCGACGAGg -3' miRNA: 3'- uGCUCG------AGCAaCGGCuCAU-GCUGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 26501 | 0.66 | 0.821221 |
Target: 5'- cGCGAGCUCGccGCC-----CGGCGAGa -3' miRNA: 3'- -UGCUCGAGCaaCGGcucauGCUGCUC- -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 26381 | 0.67 | 0.806452 |
Target: 5'- gGCGAGCcUGUUgcucgcgauuccgacGCCGGGcGCGGCGGu -3' miRNA: 3'- -UGCUCGaGCAA---------------CGGCUCaUGCUGCUc -5' |
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23402 | 3' | -54.1 | NC_005259.1 | + | 21216 | 0.7 | 0.625769 |
Target: 5'- cCGAGCUCauccgaGCCGAGUACGccucggcagcgcGCGGGu -3' miRNA: 3'- uGCUCGAGcaa---CGGCUCAUGC------------UGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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