Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23402 | 5' | -58 | NC_005259.1 | + | 14802 | 0.66 | 0.644471 |
Target: 5'- gUUCCaCGCCggGCUGAUGAcCGGUGAGg-- -3' miRNA: 3'- -AAGG-GCGG--UGGCUGCU-GUCGCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 41714 | 0.69 | 0.420503 |
Target: 5'- --gCCGCCgcauACCGGCGGCGGgGAGg-- -3' miRNA: 3'- aagGGCGG----UGGCUGCUGUCgCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 38205 | 0.69 | 0.429753 |
Target: 5'- -cCuuGUCGCCGuugauCGACAGCGAGa-- -3' miRNA: 3'- aaGggCGGUGGCu----GCUGUCGCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 2232 | 0.69 | 0.448606 |
Target: 5'- -cCUCGCCAuuugUCGGCGACAGCcGGUAc -3' miRNA: 3'- aaGGGCGGU----GGCUGCUGUCGcUCAUc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 23651 | 0.69 | 0.448606 |
Target: 5'- -gCCCGCCGaCGGCGACGGCuGGa-- -3' miRNA: 3'- aaGGGCGGUgGCUGCUGUCGcUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 55097 | 0.69 | 0.448606 |
Target: 5'- --aUCGCUGCCGAUGGCGGCGAa--- -3' miRNA: 3'- aagGGCGGUGGCUGCUGUCGCUcauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 16564 | 0.68 | 0.466932 |
Target: 5'- aUCCCGCCcaccgggcagaucGCCGAgGACAucgcccGCGAGg-- -3' miRNA: 3'- aAGGGCGG-------------UGGCUgCUGU------CGCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 60563 | 0.68 | 0.477717 |
Target: 5'- -gCCCGgUGCCGACGgucaggcggcccACGGCGAGUcGGg -3' miRNA: 3'- aaGGGCgGUGGCUGC------------UGUCGCUCA-UC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 68537 | 0.68 | 0.50773 |
Target: 5'- -gCCCGCCACgCGuCGACAuCgGGGUGGu -3' miRNA: 3'- aaGGGCGGUG-GCuGCUGUcG-CUCAUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 24884 | 0.69 | 0.420503 |
Target: 5'- --aCCGCUaucgagucaGCCGAgGACGGCGAGcGGg -3' miRNA: 3'- aagGGCGG---------UGGCUgCUGUCGCUCaUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 54484 | 0.7 | 0.375264 |
Target: 5'- aUCCCGCCgagggucAUCGGCGggcaugGCGGCGAuGUGGg -3' miRNA: 3'- aAGGGCGG-------UGGCUGC------UGUCGCU-CAUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 42455 | 0.7 | 0.367629 |
Target: 5'- gUCCaacaGUCGCCGACuACGGCGAGg-- -3' miRNA: 3'- aAGGg---CGGUGGCUGcUGUCGCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 37049 | 0.77 | 0.133493 |
Target: 5'- -gCCCGCCACCGcccACGGCGGCG-GUGu -3' miRNA: 3'- aaGGGCGGUGGC---UGCUGUCGCuCAUc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 37733 | 0.75 | 0.203448 |
Target: 5'- --aCCGCCGCCGACGAgcugcucgaugacCAGCGcGGUGGc -3' miRNA: 3'- aagGGCGGUGGCUGCU-------------GUCGC-UCAUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 47627 | 0.73 | 0.256461 |
Target: 5'- cUUgUCGUCGCCGAgGGCAGCGAGg-- -3' miRNA: 3'- -AAgGGCGGUGGCUgCUGUCGCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 60375 | 0.73 | 0.262931 |
Target: 5'- aUCCCGCCaaucGCCgGACaGCGGCGAGgcGa -3' miRNA: 3'- aAGGGCGG----UGG-CUGcUGUCGCUCauC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 21164 | 0.72 | 0.283137 |
Target: 5'- --gUCGUCACCGACGGCAGuCGGGUc- -3' miRNA: 3'- aagGGCGGUGGCUGCUGUC-GCUCAuc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 6220 | 0.72 | 0.311961 |
Target: 5'- --gCCGCCgcGCCGAcaccgugacCGugGGCGAGUGGg -3' miRNA: 3'- aagGGCGG--UGGCU---------GCugUCGCUCAUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 51023 | 0.72 | 0.311961 |
Target: 5'- gUCgUGCUACCGACGAgCGGCGGGc-- -3' miRNA: 3'- aAGgGCGGUGGCUGCU-GUCGCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 56741 | 0.71 | 0.335007 |
Target: 5'- -aUCCGCCACCGAUGACccaCGuGUGGc -3' miRNA: 3'- aaGGGCGGUGGCUGCUGuc-GCuCAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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