Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23402 | 5' | -58 | NC_005259.1 | + | 927 | 0.67 | 0.54892 |
Target: 5'- -aCCUGCUGCUGcGCGACAGCGGa--- -3' miRNA: 3'- aaGGGCGGUGGC-UGCUGUCGCUcauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 2232 | 0.69 | 0.448606 |
Target: 5'- -cCUCGCCAuuugUCGGCGACAGCcGGUAc -3' miRNA: 3'- aaGGGCGGU----GGCUGCUGUCGcUCAUc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 3121 | 0.66 | 0.601735 |
Target: 5'- -gCgCGgCACCGugGGCAGCGGacggcaccgcccGUGGg -3' miRNA: 3'- aaGgGCgGUGGCugCUGUCGCU------------CAUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 4419 | 0.66 | 0.609201 |
Target: 5'- --gCCGCCACCGcGCGcccgaggucgagccGCccguGCGAGUGGg -3' miRNA: 3'- aagGGCGGUGGC-UGC--------------UGu---CGCUCAUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 6220 | 0.72 | 0.311961 |
Target: 5'- --gCCGCCgcGCCGAcaccgugacCGugGGCGAGUGGg -3' miRNA: 3'- aagGGCGG--UGGCU---------GCugUCGCUCAUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 10571 | 0.68 | 0.517913 |
Target: 5'- aUCgCGCCGCCu-CGACGGCGAa--- -3' miRNA: 3'- aAGgGCGGUGGcuGCUGUCGCUcauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 14802 | 0.66 | 0.644471 |
Target: 5'- gUUCCaCGCCggGCUGAUGAcCGGUGAGg-- -3' miRNA: 3'- -AAGG-GCGG--UGGCUGCU-GUCGCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 16013 | 0.66 | 0.601735 |
Target: 5'- aUCCUGCCgGuuGACGAgGGUGGGa-- -3' miRNA: 3'- aAGGGCGG-UggCUGCUgUCGCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 16564 | 0.68 | 0.466932 |
Target: 5'- aUCCCGCCcaccgggcagaucGCCGAgGACAucgcccGCGAGg-- -3' miRNA: 3'- aAGGGCGG-------------UGGCUgCUGU------CGCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 21164 | 0.72 | 0.283137 |
Target: 5'- --gUCGUCACCGACGGCAGuCGGGUc- -3' miRNA: 3'- aagGGCGGUGGCUGCUGUC-GCUCAuc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 23651 | 0.69 | 0.448606 |
Target: 5'- -gCCCGCCGaCGGCGACGGCuGGa-- -3' miRNA: 3'- aaGGGCGGUgGCUGCUGUCGcUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 24884 | 0.69 | 0.420503 |
Target: 5'- --aCCGCUaucgagucaGCCGAgGACGGCGAGcGGg -3' miRNA: 3'- aagGGCGG---------UGGCUgCUGUCGCUCaUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 28225 | 0.79 | 0.101603 |
Target: 5'- gUgCCGCCACCGuCGGCGGCgGGGUGGu -3' miRNA: 3'- aAgGGCGGUGGCuGCUGUCG-CUCAUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 28383 | 0.67 | 0.559387 |
Target: 5'- --gCCGaaACCgGACGACAGUGuGUAGg -3' miRNA: 3'- aagGGCggUGG-CUGCUGUCGCuCAUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 33315 | 0.67 | 0.528176 |
Target: 5'- aUCCCGCCGUCGGCGGuCAcGCGgaAGUGa -3' miRNA: 3'- aAGGGCGGUGGCUGCU-GU-CGC--UCAUc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 35648 | 0.67 | 0.568855 |
Target: 5'- --gCUGCCGCUGGCGAggguggcCAGCGcGGUGGu -3' miRNA: 3'- aagGGCGGUGGCUGCU-------GUCGC-UCAUC- -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 35882 | 0.67 | 0.528176 |
Target: 5'- --gCCGCCGCCGAgGcagaccACGGCGAGc-- -3' miRNA: 3'- aagGGCGGUGGCUgC------UGUCGCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 36882 | 0.67 | 0.538513 |
Target: 5'- -gCCCG-CGCCGACGACgccGGUGAGc-- -3' miRNA: 3'- aaGGGCgGUGGCUGCUG---UCGCUCauc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 37049 | 0.77 | 0.133493 |
Target: 5'- -gCCCGCCACCGcccACGGCGGCG-GUGu -3' miRNA: 3'- aaGGGCGGUGGC---UGCUGUCGCuCAUc -5' |
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23402 | 5' | -58 | NC_005259.1 | + | 37733 | 0.75 | 0.203448 |
Target: 5'- --aCCGCCGCCGACGAgcugcucgaugacCAGCGcGGUGGc -3' miRNA: 3'- aagGGCGGUGGCUGCU-------------GUCGC-UCAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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