miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23402 5' -58 NC_005259.1 + 68537 0.68 0.50773
Target:  5'- -gCCCGCCACgCGuCGACAuCgGGGUGGu -3'
miRNA:   3'- aaGGGCGGUG-GCuGCUGUcG-CUCAUC- -5'
23402 5' -58 NC_005259.1 + 67206 0.66 0.616676
Target:  5'- cUCgCCGCUgucggcggggucgauGCCGACcACGGCGGuGUAGg -3'
miRNA:   3'- aAG-GGCGG---------------UGGCUGcUGUCGCU-CAUC- -5'
23402 5' -58 NC_005259.1 + 62728 0.67 0.537477
Target:  5'- aUCUCGCUcgaccggACCGGCGGCAGUacgcGGUGGu -3'
miRNA:   3'- aAGGGCGG-------UGGCUGCUGUCGc---UCAUC- -5'
23402 5' -58 NC_005259.1 + 60563 0.68 0.477717
Target:  5'- -gCCCGgUGCCGACGgucaggcggcccACGGCGAGUcGGg -3'
miRNA:   3'- aaGGGCgGUGGCUGC------------UGUCGCUCA-UC- -5'
23402 5' -58 NC_005259.1 + 60375 0.73 0.262931
Target:  5'- aUCCCGCCaaucGCCgGACaGCGGCGAGgcGa -3'
miRNA:   3'- aAGGGCGG----UGG-CUGcUGUCGCUCauC- -5'
23402 5' -58 NC_005259.1 + 56741 0.71 0.335007
Target:  5'- -aUCCGCCACCGAUGACccaCGuGUGGc -3'
miRNA:   3'- aaGGGCGGUGGCUGCUGuc-GCuCAUC- -5'
23402 5' -58 NC_005259.1 + 55097 0.69 0.448606
Target:  5'- --aUCGCUGCCGAUGGCGGCGAa--- -3'
miRNA:   3'- aagGGCGGUGGCUGCUGUCGCUcauc -5'
23402 5' -58 NC_005259.1 + 54484 0.7 0.375264
Target:  5'- aUCCCGCCgagggucAUCGGCGggcaugGCGGCGAuGUGGg -3'
miRNA:   3'- aAGGGCGG-------UGGCUGC------UGUCGCU-CAUC- -5'
23402 5' -58 NC_005259.1 + 51023 0.72 0.311961
Target:  5'- gUCgUGCUACCGACGAgCGGCGGGc-- -3'
miRNA:   3'- aAGgGCGGUGGCUGCU-GUCGCUCauc -5'
23402 5' -58 NC_005259.1 + 47627 0.73 0.256461
Target:  5'- cUUgUCGUCGCCGAgGGCAGCGAGg-- -3'
miRNA:   3'- -AAgGGCGGUGGCUgCUGUCGCUCauc -5'
23402 5' -58 NC_005259.1 + 46974 0.67 0.528176
Target:  5'- -gCCaCGCCGCCGAUGAUcgGGcCGAGg-- -3'
miRNA:   3'- aaGG-GCGGUGGCUGCUG--UC-GCUCauc -5'
23402 5' -58 NC_005259.1 + 42455 0.7 0.367629
Target:  5'- gUCCaacaGUCGCCGACuACGGCGAGg-- -3'
miRNA:   3'- aAGGg---CGGUGGCUGcUGUCGCUCauc -5'
23402 5' -58 NC_005259.1 + 41714 0.69 0.420503
Target:  5'- --gCCGCCgcauACCGGCGGCGGgGAGg-- -3'
miRNA:   3'- aagGGCGG----UGGCUGCUGUCgCUCauc -5'
23402 5' -58 NC_005259.1 + 38205 0.69 0.429753
Target:  5'- -cCuuGUCGCCGuugauCGACAGCGAGa-- -3'
miRNA:   3'- aaGggCGGUGGCu----GCUGUCGCUCauc -5'
23402 5' -58 NC_005259.1 + 37733 0.75 0.203448
Target:  5'- --aCCGCCGCCGACGAgcugcucgaugacCAGCGcGGUGGc -3'
miRNA:   3'- aagGGCGGUGGCUGCU-------------GUCGC-UCAUC- -5'
23402 5' -58 NC_005259.1 + 37049 0.77 0.133493
Target:  5'- -gCCCGCCACCGcccACGGCGGCG-GUGu -3'
miRNA:   3'- aaGGGCGGUGGC---UGCUGUCGCuCAUc -5'
23402 5' -58 NC_005259.1 + 36882 0.67 0.538513
Target:  5'- -gCCCG-CGCCGACGACgccGGUGAGc-- -3'
miRNA:   3'- aaGGGCgGUGGCUGCUG---UCGCUCauc -5'
23402 5' -58 NC_005259.1 + 35882 0.67 0.528176
Target:  5'- --gCCGCCGCCGAgGcagaccACGGCGAGc-- -3'
miRNA:   3'- aagGGCGGUGGCUgC------UGUCGCUCauc -5'
23402 5' -58 NC_005259.1 + 35648 0.67 0.568855
Target:  5'- --gCUGCCGCUGGCGAggguggcCAGCGcGGUGGu -3'
miRNA:   3'- aagGGCGGUGGCUGCU-------GUCGC-UCAUC- -5'
23402 5' -58 NC_005259.1 + 33315 0.67 0.528176
Target:  5'- aUCCCGCCGUCGGCGGuCAcGCGgaAGUGa -3'
miRNA:   3'- aAGGGCGGUGGCUGCU-GU-CGC--UCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.