miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23403 3' -51.2 NC_005259.1 + 59302 0.66 0.94269
Target:  5'- aCGCugUCGugGCGGcaGCGGCGAGcucaGCCu -3'
miRNA:   3'- -GUGuaAGUugCGUC--UGCCGUUC----UGGc -5'
23403 3' -51.2 NC_005259.1 + 11113 0.66 0.94269
Target:  5'- gUugGUgCGACGguGACGGUgcGAgCCGu -3'
miRNA:   3'- -GugUAaGUUGCguCUGCCGuuCU-GGC- -5'
23403 3' -51.2 NC_005259.1 + 24222 0.66 0.93758
Target:  5'- -----aCAACGU-GAcCGGCGGGGCCGa -3'
miRNA:   3'- guguaaGUUGCGuCU-GCCGUUCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 35362 0.66 0.932189
Target:  5'- --uGUUCAccaaGUAGGCGGUAGGuCCGa -3'
miRNA:   3'- gugUAAGUug--CGUCUGCCGUUCuGGC- -5'
23403 3' -51.2 NC_005259.1 + 43789 0.66 0.927094
Target:  5'- gGCAUgagCAGCGCGGGCaccgaguccuugccgGGCGuaccgccggacacaGGGCCGc -3'
miRNA:   3'- gUGUAa--GUUGCGUCUG---------------CCGU--------------UCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 57452 0.66 0.926513
Target:  5'- gUugGUgCGACGCu-GCGGCA-GGCCGg -3'
miRNA:   3'- -GugUAaGUUGCGucUGCCGUuCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 67155 0.66 0.926513
Target:  5'- cCGCuugUCGAUGguGGCGGCcauGCCGc -3'
miRNA:   3'- -GUGua-AGUUGCguCUGCCGuucUGGC- -5'
23403 3' -51.2 NC_005259.1 + 24160 0.67 0.914311
Target:  5'- gCGCGaugUCuACGCcaaccacaccaaGGugGGCGAGAUCGa -3'
miRNA:   3'- -GUGUa--AGuUGCG------------UCugCCGUUCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 65122 0.67 0.914311
Target:  5'- uCACcgUCGGCGCAccGGCGGCcacccCCGa -3'
miRNA:   3'- -GUGuaAGUUGCGU--CUGCCGuucu-GGC- -5'
23403 3' -51.2 NC_005259.1 + 22083 0.67 0.914311
Target:  5'- aGCucaUCGAC-CAGAUGGCGGGcACCa -3'
miRNA:   3'- gUGua-AGUUGcGUCUGCCGUUC-UGGc -5'
23403 3' -51.2 NC_005259.1 + 17594 0.67 0.914311
Target:  5'- gCGCAaccUCGGCGCgaugacgugGGGCGGCGAGGaCGg -3'
miRNA:   3'- -GUGUa--AGUUGCG---------UCUGCCGUUCUgGC- -5'
23403 3' -51.2 NC_005259.1 + 7443 0.67 0.907786
Target:  5'- cCGCAUggCAGCGCcgaGGAUGGCuuGACUu -3'
miRNA:   3'- -GUGUAa-GUUGCG---UCUGCCGuuCUGGc -5'
23403 3' -51.2 NC_005259.1 + 23614 0.67 0.907786
Target:  5'- cCGCGUggcggCAGC-CAGACGGCucGGugUGg -3'
miRNA:   3'- -GUGUAa----GUUGcGUCUGCCGu-UCugGC- -5'
23403 3' -51.2 NC_005259.1 + 34558 0.67 0.907786
Target:  5'- uGCcgUCGGgGCcGACGGCGAGGuucUCGg -3'
miRNA:   3'- gUGuaAGUUgCGuCUGCCGUUCU---GGC- -5'
23403 3' -51.2 NC_005259.1 + 52452 0.67 0.900982
Target:  5'- gAUGUUCG--GCGGAUGGC-AGACCa -3'
miRNA:   3'- gUGUAAGUugCGUCUGCCGuUCUGGc -5'
23403 3' -51.2 NC_005259.1 + 24784 0.67 0.900982
Target:  5'- cCGCcgUauGCGCAGcAgGGcCAAGACCGa -3'
miRNA:   3'- -GUGuaAguUGCGUC-UgCC-GUUCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 12028 0.67 0.891724
Target:  5'- -----aCggUGCGGGCGGCAaccgguacucaccgAGGCCGa -3'
miRNA:   3'- guguaaGuuGCGUCUGCCGU--------------UCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 30475 0.68 0.870246
Target:  5'- aGCAgccUCGAgGUAGGCcagacccGGCGAGACCu -3'
miRNA:   3'- gUGUa--AGUUgCGUCUG-------CCGUUCUGGc -5'
23403 3' -51.2 NC_005259.1 + 126 0.68 0.862913
Target:  5'- cCAUcaUCGAgGCcaACGGCAAGACCu -3'
miRNA:   3'- -GUGuaAGUUgCGucUGCCGUUCUGGc -5'
23403 3' -51.2 NC_005259.1 + 3126 0.68 0.862913
Target:  5'- gCACcgUgGGCaGCGGACGGCAccgcccgugGGACUa -3'
miRNA:   3'- -GUGuaAgUUG-CGUCUGCCGU---------UCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.