miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23403 3' -51.2 NC_005259.1 + 64018 0.68 0.854531
Target:  5'- cCGCGccCGAgGC--GCGGCGAGGCCGg -3'
miRNA:   3'- -GUGUaaGUUgCGucUGCCGUUCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 66243 0.69 0.837057
Target:  5'- uGCAgccaUCGACGCAGcGCGGCccgcGCCGg -3'
miRNA:   3'- gUGUa---AGUUGCGUC-UGCCGuuc-UGGC- -5'
23403 3' -51.2 NC_005259.1 + 32523 0.69 0.818698
Target:  5'- ----gUCGAgGCGGGCGGCAGgcuuGACCu -3'
miRNA:   3'- guguaAGUUgCGUCUGCCGUU----CUGGc -5'
23403 3' -51.2 NC_005259.1 + 42931 0.7 0.789677
Target:  5'- aGCAUgaggCccuCGCcGugGGCGAGGCCGc -3'
miRNA:   3'- gUGUAa---Guu-GCGuCugCCGUUCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 26659 0.7 0.769469
Target:  5'- gCAgGUUCGGCGCAcccGGCGGCA-GcCCGc -3'
miRNA:   3'- -GUgUAAGUUGCGU---CUGCCGUuCuGGC- -5'
23403 3' -51.2 NC_005259.1 + 49724 0.7 0.759141
Target:  5'- gAUAUUCG--GCGGGCGGCGAGAgCu -3'
miRNA:   3'- gUGUAAGUugCGUCUGCCGUUCUgGc -5'
23403 3' -51.2 NC_005259.1 + 41491 0.7 0.759141
Target:  5'- gCACGaccUCGGCGguGGCGGgcAGACCGu -3'
miRNA:   3'- -GUGUa--AGUUGCguCUGCCguUCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 20634 0.7 0.748679
Target:  5'- uGCGUUCGuuCGCGacacguucGGCGGCAccgGGGCCGa -3'
miRNA:   3'- gUGUAAGUu-GCGU--------CUGCCGU---UCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 52157 0.71 0.694786
Target:  5'- gGCAggCAGCGCcgAGGCGcucaugcaGCAGGACCGc -3'
miRNA:   3'- gUGUaaGUUGCG--UCUGC--------CGUUCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 54666 0.71 0.694786
Target:  5'- uGCAUUCcuGCGUAugcucGGCGaGCGAGACCGu -3'
miRNA:   3'- gUGUAAGu-UGCGU-----CUGC-CGUUCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 35973 0.74 0.571551
Target:  5'- uCGCugUCAACgGCGggaaaccGACGGCGAGGCCGg -3'
miRNA:   3'- -GUGuaAGUUG-CGU-------CUGCCGUUCUGGC- -5'
23403 3' -51.2 NC_005259.1 + 5556 0.78 0.345096
Target:  5'- cCGCGUggGGUGguGACGGCGAGACCGu -3'
miRNA:   3'- -GUGUAagUUGCguCUGCCGUUCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.