Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23403 | 3' | -51.2 | NC_005259.1 | + | 126 | 0.68 | 0.862913 |
Target: 5'- cCAUcaUCGAgGCcaACGGCAAGACCu -3' miRNA: 3'- -GUGuaAGUUgCGucUGCCGUUCUGGc -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 3126 | 0.68 | 0.862913 |
Target: 5'- gCACcgUgGGCaGCGGACGGCAccgcccgugGGACUa -3' miRNA: 3'- -GUGuaAgUUG-CGUCUGCCGU---------UCUGGc -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 5556 | 0.78 | 0.345096 |
Target: 5'- cCGCGUggGGUGguGACGGCGAGACCGu -3' miRNA: 3'- -GUGUAagUUGCguCUGCCGUUCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 7443 | 0.67 | 0.907786 |
Target: 5'- cCGCAUggCAGCGCcgaGGAUGGCuuGACUu -3' miRNA: 3'- -GUGUAa-GUUGCG---UCUGCCGuuCUGGc -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 11113 | 0.66 | 0.94269 |
Target: 5'- gUugGUgCGACGguGACGGUgcGAgCCGu -3' miRNA: 3'- -GugUAaGUUGCguCUGCCGuuCU-GGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 12028 | 0.67 | 0.891724 |
Target: 5'- -----aCggUGCGGGCGGCAaccgguacucaccgAGGCCGa -3' miRNA: 3'- guguaaGuuGCGUCUGCCGU--------------UCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 17594 | 0.67 | 0.914311 |
Target: 5'- gCGCAaccUCGGCGCgaugacgugGGGCGGCGAGGaCGg -3' miRNA: 3'- -GUGUa--AGUUGCG---------UCUGCCGUUCUgGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 20634 | 0.7 | 0.748679 |
Target: 5'- uGCGUUCGuuCGCGacacguucGGCGGCAccgGGGCCGa -3' miRNA: 3'- gUGUAAGUu-GCGU--------CUGCCGU---UCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 22083 | 0.67 | 0.914311 |
Target: 5'- aGCucaUCGAC-CAGAUGGCGGGcACCa -3' miRNA: 3'- gUGua-AGUUGcGUCUGCCGUUC-UGGc -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 23614 | 0.67 | 0.907786 |
Target: 5'- cCGCGUggcggCAGC-CAGACGGCucGGugUGg -3' miRNA: 3'- -GUGUAa----GUUGcGUCUGCCGu-UCugGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 24160 | 0.67 | 0.914311 |
Target: 5'- gCGCGaugUCuACGCcaaccacaccaaGGugGGCGAGAUCGa -3' miRNA: 3'- -GUGUa--AGuUGCG------------UCugCCGUUCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 24222 | 0.66 | 0.93758 |
Target: 5'- -----aCAACGU-GAcCGGCGGGGCCGa -3' miRNA: 3'- guguaaGUUGCGuCU-GCCGUUCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 24784 | 0.67 | 0.900982 |
Target: 5'- cCGCcgUauGCGCAGcAgGGcCAAGACCGa -3' miRNA: 3'- -GUGuaAguUGCGUC-UgCC-GUUCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 26659 | 0.7 | 0.769469 |
Target: 5'- gCAgGUUCGGCGCAcccGGCGGCA-GcCCGc -3' miRNA: 3'- -GUgUAAGUUGCGU---CUGCCGUuCuGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 30475 | 0.68 | 0.870246 |
Target: 5'- aGCAgccUCGAgGUAGGCcagacccGGCGAGACCu -3' miRNA: 3'- gUGUa--AGUUgCGUCUG-------CCGUUCUGGc -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 32523 | 0.69 | 0.818698 |
Target: 5'- ----gUCGAgGCGGGCGGCAGgcuuGACCu -3' miRNA: 3'- guguaAGUUgCGUCUGCCGUU----CUGGc -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 34558 | 0.67 | 0.907786 |
Target: 5'- uGCcgUCGGgGCcGACGGCGAGGuucUCGg -3' miRNA: 3'- gUGuaAGUUgCGuCUGCCGUUCU---GGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 35362 | 0.66 | 0.932189 |
Target: 5'- --uGUUCAccaaGUAGGCGGUAGGuCCGa -3' miRNA: 3'- gugUAAGUug--CGUCUGCCGUUCuGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 35973 | 0.74 | 0.571551 |
Target: 5'- uCGCugUCAACgGCGggaaaccGACGGCGAGGCCGg -3' miRNA: 3'- -GUGuaAGUUG-CGU-------CUGCCGUUCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 41491 | 0.7 | 0.759141 |
Target: 5'- gCACGaccUCGGCGguGGCGGgcAGACCGu -3' miRNA: 3'- -GUGUa--AGUUGCguCUGCCguUCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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