miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23403 5' -59.2 NC_005259.1 + 26498 0.74 0.160627
Target:  5'- cGCcGCgagCUCGCCGCCCGgCGAGa-- -3'
miRNA:   3'- uCGuCGa--GAGCGGCGGGCgGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 53461 0.73 0.203609
Target:  5'- cGGCGGCUggCUCGUCguccgGCCCGCCGuAGUAg -3'
miRNA:   3'- -UCGUCGA--GAGCGG-----CGGGCGGC-UUAUa -5'
23403 5' -59.2 NC_005259.1 + 1365 0.72 0.237542
Target:  5'- gGGCcGCUCgccgCGCCGCCCG-CGAGg-- -3'
miRNA:   3'- -UCGuCGAGa---GCGGCGGGCgGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 13544 0.72 0.243638
Target:  5'- aAGCAGUUCgcgaUGUgGCCCGCCGAc--- -3'
miRNA:   3'- -UCGUCGAGa---GCGgCGGGCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 37283 0.7 0.28929
Target:  5'- cGGCAGgaCUUGCauggcggUGCCCGCCGggUc- -3'
miRNA:   3'- -UCGUCgaGAGCG-------GCGGGCGGCuuAua -5'
23403 5' -59.2 NC_005259.1 + 58695 0.7 0.289998
Target:  5'- gGGuCGGCUCgUCGCCGCCgccgucaccauCGCCGGGg-- -3'
miRNA:   3'- -UC-GUCGAG-AGCGGCGG-----------GCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 19860 0.7 0.289998
Target:  5'- uGUGGCgCUCG-CGCCCGCCGGGa-- -3'
miRNA:   3'- uCGUCGaGAGCgGCGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 36662 0.7 0.297159
Target:  5'- cGCcGCcCUCGCCGCcgCCGCCGGGg-- -3'
miRNA:   3'- uCGuCGaGAGCGGCG--GGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 36995 0.7 0.304456
Target:  5'- cGCAccGUUCUUGCCcgcgcGCCCGCCGGGg-- -3'
miRNA:   3'- uCGU--CGAGAGCGG-----CGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 49092 0.7 0.311891
Target:  5'- aGGguGUcaUgGCCGCCCGCCGGGa-- -3'
miRNA:   3'- -UCguCGagAgCGGCGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 5537 0.7 0.319462
Target:  5'- uGGCuGCUCUCGCCcgagGCCgCGUgGggUGg -3'
miRNA:   3'- -UCGuCGAGAGCGG----CGG-GCGgCuuAUa -5'
23403 5' -59.2 NC_005259.1 + 3275 0.7 0.32717
Target:  5'- gGGUGGUUUcccgUCGCCGCCuCGCCGGu--- -3'
miRNA:   3'- -UCGUCGAG----AGCGGCGG-GCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 46930 0.69 0.335016
Target:  5'- cGCcgAGCUUgccCGCCGCgCCGCCGAc--- -3'
miRNA:   3'- uCG--UCGAGa--GCGGCG-GGCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 37198 0.69 0.342998
Target:  5'- uGCGGCcCUUGCCGCcaccgccgccgCCGCCGGGg-- -3'
miRNA:   3'- uCGUCGaGAGCGGCG-----------GGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 36719 0.69 0.342998
Target:  5'- uGCcGCUCgaccCGCCgcGCCCGCCGGGa-- -3'
miRNA:   3'- uCGuCGAGa---GCGG--CGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 37368 0.69 0.351116
Target:  5'- gAGUAGCUCaCGCCcucggcaccGCCCGCCGc---- -3'
miRNA:   3'- -UCGUCGAGaGCGG---------CGGGCGGCuuaua -5'
23403 5' -59.2 NC_005259.1 + 47964 0.69 0.359369
Target:  5'- uGGCcGC-CgCGCCGCCCG-CGAAUAUg -3'
miRNA:   3'- -UCGuCGaGaGCGGCGGGCgGCUUAUA- -5'
23403 5' -59.2 NC_005259.1 + 43961 0.69 0.376279
Target:  5'- gGGCGGggC-CGCCGCCUGaCCGAGg-- -3'
miRNA:   3'- -UCGUCgaGaGCGGCGGGC-GGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 66839 0.68 0.384933
Target:  5'- --uGGCUCaUGCCGCCCGCaCGGGc-- -3'
miRNA:   3'- ucgUCGAGaGCGGCGGGCG-GCUUaua -5'
23403 5' -59.2 NC_005259.1 + 9139 0.68 0.384933
Target:  5'- gGGCAGCcgugCUCG-UGCCCGUCGAcgGc -3'
miRNA:   3'- -UCGUCGa---GAGCgGCGGGCGGCUuaUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.