miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23403 5' -59.2 NC_005259.1 + 1365 0.72 0.237542
Target:  5'- gGGCcGCUCgccgCGCCGCCCG-CGAGg-- -3'
miRNA:   3'- -UCGuCGAGa---GCGGCGGGCgGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 1698 0.68 0.420837
Target:  5'- aAGCGcgaaCUCaagCGCCGCCuCGCCGAGg-- -3'
miRNA:   3'- -UCGUc---GAGa--GCGGCGG-GCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 1820 0.67 0.468434
Target:  5'- gAGCAaucccGCcgaccugCUCGCCGCugCCGCCGAGg-- -3'
miRNA:   3'- -UCGU-----CGa------GAGCGGCG--GGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 2161 0.66 0.508421
Target:  5'- cAGCGGCgUCgaGCCGCCgguUGCCGAGg-- -3'
miRNA:   3'- -UCGUCG-AGagCGGCGG---GCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 3275 0.7 0.32717
Target:  5'- gGGUGGUUUcccgUCGCCGCCuCGCCGGu--- -3'
miRNA:   3'- -UCGUCGAG----AGCGGCGG-GCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 5537 0.7 0.319462
Target:  5'- uGGCuGCUCUCGCCcgagGCCgCGUgGggUGg -3'
miRNA:   3'- -UCGuCGAGAGCGG----CGG-GCGgCuuAUa -5'
23403 5' -59.2 NC_005259.1 + 6200 0.68 0.393718
Target:  5'- gAGCAGCgugagCggggugaGCCGCCgCGCCGAc--- -3'
miRNA:   3'- -UCGUCGa----Gag-----CGGCGG-GCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 8858 0.66 0.52895
Target:  5'- -aCAGCgugCcCGCCGCCUGCCGc---- -3'
miRNA:   3'- ucGUCGa--GaGCGGCGGGCGGCuuaua -5'
23403 5' -59.2 NC_005259.1 + 9082 0.66 0.498282
Target:  5'- cAGCauaGGC-C-CGuuGCCCGCCGAGg-- -3'
miRNA:   3'- -UCG---UCGaGaGCggCGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 9139 0.68 0.384933
Target:  5'- gGGCAGCcgugCUCG-UGCCCGUCGAcgGc -3'
miRNA:   3'- -UCGUCGa---GAGCgGCGGGCGGCUuaUa -5'
23403 5' -59.2 NC_005259.1 + 13544 0.72 0.243638
Target:  5'- aAGCAGUUCgcgaUGUgGCCCGCCGAc--- -3'
miRNA:   3'- -UCGUCGAGa---GCGgCGGGCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 19860 0.7 0.289998
Target:  5'- uGUGGCgCUCG-CGCCCGCCGGGa-- -3'
miRNA:   3'- uCGUCGaGAGCgGCGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 25776 0.67 0.45869
Target:  5'- gGGCAGCUCUCGCCcuaCCCaaucUCGGAc-- -3'
miRNA:   3'- -UCGUCGAGAGCGGc--GGGc---GGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 26498 0.74 0.160627
Target:  5'- cGCcGCgagCUCGCCGCCCGgCGAGa-- -3'
miRNA:   3'- uCGuCGa--GAGCGGCGGGCgGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 27406 0.67 0.468434
Target:  5'- cAGCGGCggcagCUCGgUGCCCGCgaGGAa-- -3'
miRNA:   3'- -UCGUCGa----GAGCgGCGGGCGg-CUUaua -5'
23403 5' -59.2 NC_005259.1 + 28941 0.68 0.402631
Target:  5'- aGGCGGCacgaUCcugCGCCGCaUCGCCGAGg-- -3'
miRNA:   3'- -UCGUCG----AGa--GCGGCG-GGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 30148 0.66 0.508421
Target:  5'- gGGCAGCUCgaccggGCCGCCUacagGCCGc---- -3'
miRNA:   3'- -UCGUCGAGag----CGGCGGG----CGGCuuaua -5'
23403 5' -59.2 NC_005259.1 + 31248 0.67 0.478284
Target:  5'- cGCGGCgg-UGCCGCCCcacacGCCGcAGUAg -3'
miRNA:   3'- uCGUCGagaGCGGCGGG-----CGGC-UUAUa -5'
23403 5' -59.2 NC_005259.1 + 34475 0.68 0.393718
Target:  5'- gAGCAGCUUgguggUGUCcCCCGCCGAc--- -3'
miRNA:   3'- -UCGUCGAGa----GCGGcGGGCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 34544 0.66 0.549777
Target:  5'- aGGCAGCcucagCUUGCCGUCgggGCCGAcgGc -3'
miRNA:   3'- -UCGUCGa----GAGCGGCGGg--CGGCUuaUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.