miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23403 5' -59.2 NC_005259.1 + 68707 0.67 0.467455
Target:  5'- gGGCAGCgcgucggugCccgagaacuggggUCGCCGCuuGCCGAGc-- -3'
miRNA:   3'- -UCGUCGa--------G-------------AGCGGCGggCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 66839 0.68 0.384933
Target:  5'- --uGGCUCaUGCCGCCCGCaCGGGc-- -3'
miRNA:   3'- ucgUCGAGaGCGGCGGGCG-GCUUaua -5'
23403 5' -59.2 NC_005259.1 + 66276 0.66 0.549777
Target:  5'- cGGCGGCUCaCGCCGCCaccauccacucUGCgCGcAUGUg -3'
miRNA:   3'- -UCGUCGAGaGCGGCGG-----------GCG-GCuUAUA- -5'
23403 5' -59.2 NC_005259.1 + 64679 0.67 0.488235
Target:  5'- -cCAGCaC-CGCCGCgCCGCCGAGc-- -3'
miRNA:   3'- ucGUCGaGaGCGGCG-GGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 63164 0.68 0.411672
Target:  5'- gAGCAGC---CGCCGCagcgCCGCCGAGg-- -3'
miRNA:   3'- -UCGUCGagaGCGGCG----GGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 62937 0.67 0.468434
Target:  5'- uGCGGCUCgCGCUGC-UGCCGGGc-- -3'
miRNA:   3'- uCGUCGAGaGCGGCGgGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 60066 0.66 0.498282
Target:  5'- gGGCucaGGCUCggGCgGCUCGCCGAc--- -3'
miRNA:   3'- -UCG---UCGAGagCGgCGGGCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 58695 0.7 0.289998
Target:  5'- gGGuCGGCUCgUCGCCGCCgccgucaccauCGCCGGGg-- -3'
miRNA:   3'- -UC-GUCGAG-AGCGGCGG-----------GCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 53461 0.73 0.203609
Target:  5'- cGGCGGCUggCUCGUCguccgGCCCGCCGuAGUAg -3'
miRNA:   3'- -UCGUCGA--GAGCGG-----CGGGCGGC-UUAUa -5'
23403 5' -59.2 NC_005259.1 + 49092 0.7 0.311891
Target:  5'- aGGguGUcaUgGCCGCCCGCCGGGa-- -3'
miRNA:   3'- -UCguCGagAgCGGCGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 48510 0.67 0.488235
Target:  5'- gGGCcGCgaCUUGCCGCaCUGCCGAc--- -3'
miRNA:   3'- -UCGuCGa-GAGCGGCG-GGCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 48453 0.66 0.53933
Target:  5'- cGGCAGCgcgUUCcaCCGCgCGCCGggUc- -3'
miRNA:   3'- -UCGUCGa--GAGc-GGCGgGCGGCuuAua -5'
23403 5' -59.2 NC_005259.1 + 47964 0.69 0.359369
Target:  5'- uGGCcGC-CgCGCCGCCCG-CGAAUAUg -3'
miRNA:   3'- -UCGuCGaGaGCGGCGGGCgGCUUAUA- -5'
23403 5' -59.2 NC_005259.1 + 46930 0.69 0.335016
Target:  5'- cGCcgAGCUUgccCGCCGCgCCGCCGAc--- -3'
miRNA:   3'- uCG--UCGAGa--GCGGCG-GGCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 46575 0.68 0.420837
Target:  5'- cGCGGCgUCgaccgCGCCGCCCGaggCGAGc-- -3'
miRNA:   3'- uCGUCG-AGa----GCGGCGGGCg--GCUUaua -5'
23403 5' -59.2 NC_005259.1 + 45610 0.67 0.478284
Target:  5'- cAGCucGgUCUCGauGCCCGCCGGGc-- -3'
miRNA:   3'- -UCGu-CgAGAGCggCGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 44231 0.66 0.518645
Target:  5'- --gAGCUCgcccgccgCGCCGCCCGCgcgCGAGa-- -3'
miRNA:   3'- ucgUCGAGa-------GCGGCGGGCG---GCUUaua -5'
23403 5' -59.2 NC_005259.1 + 43961 0.69 0.376279
Target:  5'- gGGCGGggC-CGCCGCCUGaCCGAGg-- -3'
miRNA:   3'- -UCGUCgaGaGCGGCGGGC-GGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 43733 0.66 0.52895
Target:  5'- uGGCGGC-CaUGCCGCCgaGCCGGGc-- -3'
miRNA:   3'- -UCGUCGaGaGCGGCGGg-CGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 43284 0.68 0.430124
Target:  5'- cGCAGCgCcCGCCgccgacgcGCCCGCCuGAAUGg -3'
miRNA:   3'- uCGUCGaGaGCGG--------CGGGCGG-CUUAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.