miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23403 5' -59.2 NC_005259.1 + 36662 0.7 0.297159
Target:  5'- cGCcGCcCUCGCCGCcgCCGCCGGGg-- -3'
miRNA:   3'- uCGuCGaGAGCGGCG--GGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 36719 0.69 0.342998
Target:  5'- uGCcGCUCgaccCGCCgcGCCCGCCGGGa-- -3'
miRNA:   3'- uCGuCGAGa---GCGG--CGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 36842 0.68 0.430124
Target:  5'- uGCAcguGCUgaCGCCGCCCGCUGc---- -3'
miRNA:   3'- uCGU---CGAgaGCGGCGGGCGGCuuaua -5'
23403 5' -59.2 NC_005259.1 + 36995 0.7 0.304456
Target:  5'- cGCAccGUUCUUGCCcgcgcGCCCGCCGGGg-- -3'
miRNA:   3'- uCGU--CGAGAGCGG-----CGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 37198 0.69 0.342998
Target:  5'- uGCGGCcCUUGCCGCcaccgccgccgCCGCCGGGg-- -3'
miRNA:   3'- uCGUCGaGAGCGGCG-----------GGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 37283 0.7 0.28929
Target:  5'- cGGCAGgaCUUGCauggcggUGCCCGCCGggUc- -3'
miRNA:   3'- -UCGUCgaGAGCG-------GCGGGCGGCuuAua -5'
23403 5' -59.2 NC_005259.1 + 37368 0.69 0.351116
Target:  5'- gAGUAGCUCaCGCCcucggcaccGCCCGCCGc---- -3'
miRNA:   3'- -UCGUCGAGaGCGG---------CGGGCGGCuuaua -5'
23403 5' -59.2 NC_005259.1 + 37411 0.66 0.518645
Target:  5'- uGUuGUUgaCGCCGCCCGCCGu---- -3'
miRNA:   3'- uCGuCGAgaGCGGCGGGCGGCuuaua -5'
23403 5' -59.2 NC_005259.1 + 43239 0.66 0.518645
Target:  5'- gAGCgAGCUgacgaUGCCGCCCgcGCCGggUGc -3'
miRNA:   3'- -UCG-UCGAga---GCGGCGGG--CGGCuuAUa -5'
23403 5' -59.2 NC_005259.1 + 43284 0.68 0.430124
Target:  5'- cGCAGCgCcCGCCgccgacgcGCCCGCCuGAAUGg -3'
miRNA:   3'- uCGUCGaGaGCGG--------CGGGCGG-CUUAUa -5'
23403 5' -59.2 NC_005259.1 + 43733 0.66 0.52895
Target:  5'- uGGCGGC-CaUGCCGCCgaGCCGGGc-- -3'
miRNA:   3'- -UCGUCGaGaGCGGCGGg-CGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 43961 0.69 0.376279
Target:  5'- gGGCGGggC-CGCCGCCUGaCCGAGg-- -3'
miRNA:   3'- -UCGUCgaGaGCGGCGGGC-GGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 44231 0.66 0.518645
Target:  5'- --gAGCUCgcccgccgCGCCGCCCGCgcgCGAGa-- -3'
miRNA:   3'- ucgUCGAGa-------GCGGCGGGCG---GCUUaua -5'
23403 5' -59.2 NC_005259.1 + 45610 0.67 0.478284
Target:  5'- cAGCucGgUCUCGauGCCCGCCGGGc-- -3'
miRNA:   3'- -UCGu-CgAGAGCggCGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 46575 0.68 0.420837
Target:  5'- cGCGGCgUCgaccgCGCCGCCCGaggCGAGc-- -3'
miRNA:   3'- uCGUCG-AGa----GCGGCGGGCg--GCUUaua -5'
23403 5' -59.2 NC_005259.1 + 46930 0.69 0.335016
Target:  5'- cGCcgAGCUUgccCGCCGCgCCGCCGAc--- -3'
miRNA:   3'- uCG--UCGAGa--GCGGCG-GGCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 47964 0.69 0.359369
Target:  5'- uGGCcGC-CgCGCCGCCCG-CGAAUAUg -3'
miRNA:   3'- -UCGuCGaGaGCGGCGGGCgGCUUAUA- -5'
23403 5' -59.2 NC_005259.1 + 48453 0.66 0.53933
Target:  5'- cGGCAGCgcgUUCcaCCGCgCGCCGggUc- -3'
miRNA:   3'- -UCGUCGa--GAGc-GGCGgGCGGCuuAua -5'
23403 5' -59.2 NC_005259.1 + 48510 0.67 0.488235
Target:  5'- gGGCcGCgaCUUGCCGCaCUGCCGAc--- -3'
miRNA:   3'- -UCGuCGa-GAGCGGCG-GGCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 49092 0.7 0.311891
Target:  5'- aGGguGUcaUgGCCGCCCGCCGGGa-- -3'
miRNA:   3'- -UCguCGagAgCGGCGGGCGGCUUaua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.