miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23403 5' -59.2 NC_005259.1 + 25776 0.67 0.45869
Target:  5'- gGGCAGCUCUCGCCcuaCCCaaucUCGGAc-- -3'
miRNA:   3'- -UCGUCGAGAGCGGc--GGGc---GGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 43284 0.68 0.430124
Target:  5'- cGCAGCgCcCGCCgccgacgcGCCCGCCuGAAUGg -3'
miRNA:   3'- uCGUCGaGaGCGG--------CGGGCGG-CUUAUa -5'
23403 5' -59.2 NC_005259.1 + 36842 0.68 0.430124
Target:  5'- uGCAcguGCUgaCGCCGCCCGCUGc---- -3'
miRNA:   3'- uCGU---CGAgaGCGGCGGGCGGCuuaua -5'
23403 5' -59.2 NC_005259.1 + 1698 0.68 0.420837
Target:  5'- aAGCGcgaaCUCaagCGCCGCCuCGCCGAGg-- -3'
miRNA:   3'- -UCGUc---GAGa--GCGGCGG-GCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 46575 0.68 0.420837
Target:  5'- cGCGGCgUCgaccgCGCCGCCCGaggCGAGc-- -3'
miRNA:   3'- uCGUCG-AGa----GCGGCGGGCg--GCUUaua -5'
23403 5' -59.2 NC_005259.1 + 63164 0.68 0.411672
Target:  5'- gAGCAGC---CGCCGCagcgCCGCCGAGg-- -3'
miRNA:   3'- -UCGUCGagaGCGGCG----GGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 28941 0.68 0.402631
Target:  5'- aGGCGGCacgaUCcugCGCCGCaUCGCCGAGg-- -3'
miRNA:   3'- -UCGUCG----AGa--GCGGCG-GGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 6200 0.68 0.393718
Target:  5'- gAGCAGCgugagCggggugaGCCGCCgCGCCGAc--- -3'
miRNA:   3'- -UCGUCGa----Gag-----CGGCGG-GCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 34475 0.68 0.393718
Target:  5'- gAGCAGCUUgguggUGUCcCCCGCCGAc--- -3'
miRNA:   3'- -UCGUCGAGa----GCGGcGGGCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 9139 0.68 0.384933
Target:  5'- gGGCAGCcgugCUCG-UGCCCGUCGAcgGc -3'
miRNA:   3'- -UCGUCGa---GAGCgGCGGGCGGCUuaUa -5'
23403 5' -59.2 NC_005259.1 + 66839 0.68 0.384933
Target:  5'- --uGGCUCaUGCCGCCCGCaCGGGc-- -3'
miRNA:   3'- ucgUCGAGaGCGGCGGGCG-GCUUaua -5'
23403 5' -59.2 NC_005259.1 + 43961 0.69 0.376279
Target:  5'- gGGCGGggC-CGCCGCCUGaCCGAGg-- -3'
miRNA:   3'- -UCGUCgaGaGCGGCGGGC-GGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 47964 0.69 0.359369
Target:  5'- uGGCcGC-CgCGCCGCCCG-CGAAUAUg -3'
miRNA:   3'- -UCGuCGaGaGCGGCGGGCgGCUUAUA- -5'
23403 5' -59.2 NC_005259.1 + 37368 0.69 0.351116
Target:  5'- gAGUAGCUCaCGCCcucggcaccGCCCGCCGc---- -3'
miRNA:   3'- -UCGUCGAGaGCGG---------CGGGCGGCuuaua -5'
23403 5' -59.2 NC_005259.1 + 37198 0.69 0.342998
Target:  5'- uGCGGCcCUUGCCGCcaccgccgccgCCGCCGGGg-- -3'
miRNA:   3'- uCGUCGaGAGCGGCG-----------GGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 36719 0.69 0.342998
Target:  5'- uGCcGCUCgaccCGCCgcGCCCGCCGGGa-- -3'
miRNA:   3'- uCGuCGAGa---GCGG--CGGGCGGCUUaua -5'
23403 5' -59.2 NC_005259.1 + 46930 0.69 0.335016
Target:  5'- cGCcgAGCUUgccCGCCGCgCCGCCGAc--- -3'
miRNA:   3'- uCG--UCGAGa--GCGGCG-GGCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 3275 0.7 0.32717
Target:  5'- gGGUGGUUUcccgUCGCCGCCuCGCCGGu--- -3'
miRNA:   3'- -UCGUCGAG----AGCGGCGG-GCGGCUuaua -5'
23403 5' -59.2 NC_005259.1 + 5537 0.7 0.319462
Target:  5'- uGGCuGCUCUCGCCcgagGCCgCGUgGggUGg -3'
miRNA:   3'- -UCGuCGAGAGCGG----CGG-GCGgCuuAUa -5'
23403 5' -59.2 NC_005259.1 + 49092 0.7 0.311891
Target:  5'- aGGguGUcaUgGCCGCCCGCCGGGa-- -3'
miRNA:   3'- -UCguCGagAgCGGCGGGCGGCUUaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.