miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23404 3' -54.6 NC_005259.1 + 4900 0.66 0.80432
Target:  5'- gGGUGAUcg-GAUGAGCUGCuuugCCGuAGGg -3'
miRNA:   3'- -CUACUGcuaCUACUCGACG----GGC-UCCa -5'
23404 3' -54.6 NC_005259.1 + 11123 0.66 0.794699
Target:  5'- cGGUGACGGUGc-GAGCcgucGCCUGcGGGUa -3'
miRNA:   3'- -CUACUGCUACuaCUCGa---CGGGC-UCCA- -5'
23404 3' -54.6 NC_005259.1 + 31668 0.66 0.774961
Target:  5'- -uUGACcucGAcgGGGUUGCCCGAGGc -3'
miRNA:   3'- cuACUGcuaCUa-CUCGACGGGCUCCa -5'
23404 3' -54.6 NC_005259.1 + 23043 0.66 0.764866
Target:  5'- --cGACGAc---GAGCUGCCCggcGAGGg -3'
miRNA:   3'- cuaCUGCUacuaCUCGACGGG---CUCCa -5'
23404 3' -54.6 NC_005259.1 + 43361 0.67 0.733812
Target:  5'- cGAUGAUGuacuUGAUGAGC-GCCUGAa-- -3'
miRNA:   3'- -CUACUGCu---ACUACUCGaCGGGCUcca -5'
23404 3' -54.6 NC_005259.1 + 64394 0.67 0.733812
Target:  5'- uGUGGguCGGUGAUGAGCUgcgaugcaGCCgUGAGGg -3'
miRNA:   3'- cUACU--GCUACUACUCGA--------CGG-GCUCCa -5'
23404 3' -54.6 NC_005259.1 + 25973 0.67 0.733812
Target:  5'- ---uGCGAUGAgaccGGGCaGCgCCGAGGUg -3'
miRNA:   3'- cuacUGCUACUa---CUCGaCG-GGCUCCA- -5'
23404 3' -54.6 NC_005259.1 + 19241 0.67 0.727481
Target:  5'- --cGGCGAUGAUcgauggccgccugccGGGCcGCCCGAuGGa -3'
miRNA:   3'- cuaCUGCUACUA---------------CUCGaCGGGCU-CCa -5'
23404 3' -54.6 NC_005259.1 + 37501 0.68 0.691036
Target:  5'- --cGGCGGUGAgcacGAuGCUGCCCGAc-- -3'
miRNA:   3'- cuaCUGCUACUa---CU-CGACGGGCUcca -5'
23404 3' -54.6 NC_005259.1 + 36931 0.68 0.669263
Target:  5'- --cGACGGUGAgUGuuGCUGUcaCCGGGGUg -3'
miRNA:   3'- cuaCUGCUACU-ACu-CGACG--GGCUCCA- -5'
23404 3' -54.6 NC_005259.1 + 12687 0.7 0.57073
Target:  5'- gGAUGACGAggGA-GAGUgGCUCGGGGa -3'
miRNA:   3'- -CUACUGCUa-CUaCUCGaCGGGCUCCa -5'
23404 3' -54.6 NC_005259.1 + 39128 0.7 0.57073
Target:  5'- --cGACaucGGUGAGCUGCCCGAuGUg -3'
miRNA:   3'- cuaCUGcuaCUACUCGACGGGCUcCA- -5'
23404 3' -54.6 NC_005259.1 + 28136 0.71 0.517306
Target:  5'- --cGACGuaggcGAUGAGCUGCCCGGc-- -3'
miRNA:   3'- cuaCUGCua---CUACUCGACGGGCUcca -5'
23404 3' -54.6 NC_005259.1 + 46434 0.71 0.476052
Target:  5'- cGUGACGAUGGUGgcaAGCUGCUgcucggUGAGGc -3'
miRNA:   3'- cUACUGCUACUAC---UCGACGG------GCUCCa -5'
23404 3' -54.6 NC_005259.1 + 14646 0.73 0.372107
Target:  5'- cGUGACGAUGGcgUGGGCUcaGCCCGAcucGGg -3'
miRNA:   3'- cUACUGCUACU--ACUCGA--CGGGCU---CCa -5'
23404 3' -54.6 NC_005259.1 + 8780 0.75 0.29932
Target:  5'- --cGGCGGUGAUGAGCUcgGCCCGcuuGGc -3'
miRNA:   3'- cuaCUGCUACUACUCGA--CGGGCu--CCa -5'
23404 3' -54.6 NC_005259.1 + 37624 0.78 0.182646
Target:  5'- uGAUGGgGAUGAUGuGCUGCCCGAu-- -3'
miRNA:   3'- -CUACUgCUACUACuCGACGGGCUcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.