miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23404 5' -65.1 NC_005259.1 + 13104 0.76 0.062477
Target:  5'- cGACCCCgGCCCGCuCGG-C-GGCUACGa -3'
miRNA:   3'- aCUGGGG-CGGGCG-GCCaGaCCGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 37416 0.75 0.079323
Target:  5'- uUGACgCCGCCCGCCGuGccaUUGGCCAuCGg -3'
miRNA:   3'- -ACUGgGGCGGGCGGC-Ca--GACCGGU-GC- -5'
23404 5' -65.1 NC_005259.1 + 39902 0.73 0.105834
Target:  5'- -cGCCgCCGCCCGCCucgauccGUCgagGGCCGCGu -3'
miRNA:   3'- acUGG-GGCGGGCGGc------CAGa--CCGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 57899 0.72 0.117398
Target:  5'- aGACCCCGCuuGagaCGGaugUUGGUCGCGa -3'
miRNA:   3'- aCUGGGGCGggCg--GCCa--GACCGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 26037 0.72 0.126833
Target:  5'- uUGGCCagcaGCgCCGCCGGgUUGGCCAUGc -3'
miRNA:   3'- -ACUGGgg--CG-GGCGGCCaGACCGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 42498 0.72 0.130131
Target:  5'- gUGA-CCCGUCCGgCGGUgUGGCCAg- -3'
miRNA:   3'- -ACUgGGGCGGGCgGCCAgACCGGUgc -5'
23404 5' -65.1 NC_005259.1 + 26115 0.71 0.151634
Target:  5'- aGACCgCCG-CCGCCGGUCgccGGUC-CGa -3'
miRNA:   3'- aCUGG-GGCgGGCGGCCAGa--CCGGuGC- -5'
23404 5' -65.1 NC_005259.1 + 60131 0.7 0.163556
Target:  5'- cGGCCUCGuCCUGCgCGGcCuUGGCCGCc -3'
miRNA:   3'- aCUGGGGC-GGGCG-GCCaG-ACCGGUGc -5'
23404 5' -65.1 NC_005259.1 + 37213 0.7 0.167713
Target:  5'- -cACCgCCGCcgCCGCCGGggcgCUGGCC-CGu -3'
miRNA:   3'- acUGG-GGCG--GGCGGCCa---GACCGGuGC- -5'
23404 5' -65.1 NC_005259.1 + 46518 0.7 0.18076
Target:  5'- cGAUCCCGCgaGCCGGUCggGGaUCGCc -3'
miRNA:   3'- aCUGGGGCGggCGGCCAGa-CC-GGUGc -5'
23404 5' -65.1 NC_005259.1 + 45097 0.7 0.18076
Target:  5'- cGugCCCGUguaGCCGGUCgGGCCGa- -3'
miRNA:   3'- aCugGGGCGgg-CGGCCAGaCCGGUgc -5'
23404 5' -65.1 NC_005259.1 + 28949 0.7 0.18076
Target:  5'- cGAUCCUGCgCCGCaucgccgaGGUCggugccgaGGCCGCGa -3'
miRNA:   3'- aCUGGGGCG-GGCGg-------CCAGa-------CCGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 17890 0.69 0.188546
Target:  5'- gGACCCCcgcaccgcGCgCCGaugcguguggaugcCCGGUCUGGaCCGCGc -3'
miRNA:   3'- aCUGGGG--------CG-GGC--------------GGCCAGACC-GGUGC- -5'
23404 5' -65.1 NC_005259.1 + 9579 0.69 0.204504
Target:  5'- gGugCUCGUcaacgUCGUCGGUCUGGCCGu- -3'
miRNA:   3'- aCugGGGCG-----GGCGGCCAGACCGGUgc -5'
23404 5' -65.1 NC_005259.1 + 45512 0.69 0.204504
Target:  5'- gUGGCCaCCGC--GCCGGUgUUGGCCGCc -3'
miRNA:   3'- -ACUGG-GGCGggCGGCCA-GACCGGUGc -5'
23404 5' -65.1 NC_005259.1 + 15069 0.69 0.209566
Target:  5'- gUGGCCaCCcugGCCCuugaGCCGGUCaUGcGCCGCa -3'
miRNA:   3'- -ACUGG-GG---CGGG----CGGCCAG-AC-CGGUGc -5'
23404 5' -65.1 NC_005259.1 + 12218 0.69 0.209566
Target:  5'- cGGCgCaCCGCCCGCUGGccgggcaaUGGUCACa -3'
miRNA:   3'- aCUG-G-GGCGGGCGGCCag------ACCGGUGc -5'
23404 5' -65.1 NC_005259.1 + 26604 0.69 0.213173
Target:  5'- uUGAUCCaCGCCgCGCCGGaccgguagccgauaUCgaUGGCCugGc -3'
miRNA:   3'- -ACUGGG-GCGG-GCGGCC--------------AG--ACCGGugC- -5'
23404 5' -65.1 NC_005259.1 + 65793 0.69 0.214214
Target:  5'- aUGGCCUCGaCgCGCUGGUCgaaacgcUGGCCGuCGa -3'
miRNA:   3'- -ACUGGGGC-GgGCGGCCAG-------ACCGGU-GC- -5'
23404 5' -65.1 NC_005259.1 + 8142 0.69 0.214736
Target:  5'- -uGCCCCGCgcccUCGuuGcUCUGGCCAUGg -3'
miRNA:   3'- acUGGGGCG----GGCggCcAGACCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.