miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23404 5' -65.1 NC_005259.1 + 1614 0.68 0.242245
Target:  5'- uUGGCCCuCGUCuCGUCGcuaCUGGCCAUGc -3'
miRNA:   3'- -ACUGGG-GCGG-GCGGCca-GACCGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 2229 0.68 0.256462
Target:  5'- cGGCCUCGCCauuugucggcgacaGCCGGUacGGCgACGa -3'
miRNA:   3'- aCUGGGGCGGg-------------CGGCCAgaCCGgUGC- -5'
23404 5' -65.1 NC_005259.1 + 7673 0.66 0.299077
Target:  5'- -cGCCCCGCCuCGUgGGg-UGGCC-CGu -3'
miRNA:   3'- acUGGGGCGG-GCGgCCagACCGGuGC- -5'
23404 5' -65.1 NC_005259.1 + 8142 0.69 0.214736
Target:  5'- -uGCCCCGCgcccUCGuuGcUCUGGCCAUGg -3'
miRNA:   3'- acUGGGGCG----GGCggCcAGACCGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 8244 0.68 0.220014
Target:  5'- -cACCCUGCCUuaCCGGUCUuGGgCGCGa -3'
miRNA:   3'- acUGGGGCGGGc-GGCCAGA-CCgGUGC- -5'
23404 5' -65.1 NC_005259.1 + 9060 0.66 0.32747
Target:  5'- ---aCCgGCUCGgUGGUCaUGGCCACa -3'
miRNA:   3'- acugGGgCGGGCgGCCAG-ACCGGUGc -5'
23404 5' -65.1 NC_005259.1 + 9579 0.69 0.204504
Target:  5'- gGugCUCGUcaacgUCGUCGGUCUGGCCGu- -3'
miRNA:   3'- aCugGGGCG-----GGCGGCCAGACCGGUgc -5'
23404 5' -65.1 NC_005259.1 + 9819 0.68 0.220014
Target:  5'- ---gCCCGCaCCGCCGGgugcggcgCUGGCCcaauCGa -3'
miRNA:   3'- acugGGGCG-GGCGGCCa-------GACCGGu---GC- -5'
23404 5' -65.1 NC_005259.1 + 10051 0.68 0.220014
Target:  5'- aGACCCCGaCacaCGCCGGUUUGcccucgcaggacGCCgACGa -3'
miRNA:   3'- aCUGGGGC-Gg--GCGGCCAGAC------------CGG-UGC- -5'
23404 5' -65.1 NC_005259.1 + 12218 0.69 0.209566
Target:  5'- cGGCgCaCCGCCCGCUGGccgggcaaUGGUCACa -3'
miRNA:   3'- aCUG-G-GGCGGGCGGCCag------ACCGGUGc -5'
23404 5' -65.1 NC_005259.1 + 13104 0.76 0.062477
Target:  5'- cGACCCCgGCCCGCuCGG-C-GGCUACGa -3'
miRNA:   3'- aCUGGGG-CGGGCG-GCCaGaCCGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 13393 0.66 0.342398
Target:  5'- cGACCCaCGCauuCGCuCGGccuucCUGGCCGgGg -3'
miRNA:   3'- aCUGGG-GCGg--GCG-GCCa----GACCGGUgC- -5'
23404 5' -65.1 NC_005259.1 + 15069 0.69 0.209566
Target:  5'- gUGGCCaCCcugGCCCuugaGCCGGUCaUGcGCCGCa -3'
miRNA:   3'- -ACUGG-GG---CGGG----CGGCCAG-AC-CGGUGc -5'
23404 5' -65.1 NC_005259.1 + 17219 0.66 0.310905
Target:  5'- gGACUgggcgcgagucaaaUCGCCaGCCGGUCucacgcUGGCCACc -3'
miRNA:   3'- aCUGG--------------GGCGGgCGGCCAG------ACCGGUGc -5'
23404 5' -65.1 NC_005259.1 + 17890 0.69 0.188546
Target:  5'- gGACCCCcgcaccgcGCgCCGaugcguguggaugcCCGGUCUGGaCCGCGc -3'
miRNA:   3'- aCUGGGG--------CG-GGC--------------GGCCAGACC-GGUGC- -5'
23404 5' -65.1 NC_005259.1 + 19865 0.67 0.28561
Target:  5'- -cGCUCgCGCCCGCCGGgaUCgccgacGCCGCGc -3'
miRNA:   3'- acUGGG-GCGGGCGGCC--AGac----CGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 20721 0.68 0.230904
Target:  5'- -cACCCCGCCgCGCgaaaugacguauUGGUCcGGCCAUc -3'
miRNA:   3'- acUGGGGCGG-GCG------------GCCAGaCCGGUGc -5'
23404 5' -65.1 NC_005259.1 + 22450 0.66 0.326737
Target:  5'- cGACUCuggcuaccucgugCGCCCGCgCGGUCUGaccguCCGCa -3'
miRNA:   3'- aCUGGG-------------GCGGGCG-GCCAGACc----GGUGc -5'
23404 5' -65.1 NC_005259.1 + 22618 0.68 0.22759
Target:  5'- cGACCgCCGCCCgaucaucuucgccgcGUCGGUCgacGCCGCc -3'
miRNA:   3'- aCUGG-GGCGGG---------------CGGCCAGac-CGGUGc -5'
23404 5' -65.1 NC_005259.1 + 26037 0.72 0.126833
Target:  5'- uUGGCCagcaGCgCCGCCGGgUUGGCCAUGc -3'
miRNA:   3'- -ACUGGgg--CG-GGCGGCCaGACCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.