miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23407 3' -54.1 NC_005259.1 + 22776 0.75 0.354608
Target:  5'- aGGCGCUgGUCAcugugcAGGUGCUCAcCGAGGg -3'
miRNA:   3'- gCUGCGG-UAGU------UCCGCGAGUuGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 22994 0.67 0.788351
Target:  5'- uCGACGCCGcCGAGGUcaccgaggacgGCUCGGucauCGAGa -3'
miRNA:   3'- -GCUGCGGUaGUUCCG-----------CGAGUU----GCUCc -5'
23407 3' -54.1 NC_005259.1 + 23492 0.8 0.184283
Target:  5'- cCGACGCCAUgacCAAGGCcgaGCUCAGCGAc- -3'
miRNA:   3'- -GCUGCGGUA---GUUCCG---CGAGUUGCUcc -5'
23407 3' -54.1 NC_005259.1 + 24050 0.66 0.859869
Target:  5'- -aACGUCGUCGGcgcGGUGCUCAaucucgugcaccGCGAGa -3'
miRNA:   3'- gcUGCGGUAGUU---CCGCGAGU------------UGCUCc -5'
23407 3' -54.1 NC_005259.1 + 24739 0.67 0.807372
Target:  5'- uGAUGCgGUguggggugcCGAGGCGCUCAuCGAa- -3'
miRNA:   3'- gCUGCGgUA---------GUUCCGCGAGUuGCUcc -5'
23407 3' -54.1 NC_005259.1 + 25470 0.7 0.609923
Target:  5'- uGACGaCAUCAugguguucaacaAGGCGCUCGcgcgUGAGGg -3'
miRNA:   3'- gCUGCgGUAGU------------UCCGCGAGUu---GCUCC- -5'
23407 3' -54.1 NC_005259.1 + 26876 0.66 0.843205
Target:  5'- gGugGCCcaGUCGAgcacaccaucGGUGUUCAucACGGGGc -3'
miRNA:   3'- gCugCGG--UAGUU----------CCGCGAGU--UGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 27529 0.69 0.674789
Target:  5'- -cACGCCGUCGAGGCcccaCGGCGGGa -3'
miRNA:   3'- gcUGCGGUAGUUCCGcga-GUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 29357 0.71 0.556279
Target:  5'- aGAcCGCCGUCGAGGCaCcCGuCGAGGu -3'
miRNA:   3'- gCU-GCGGUAGUUCCGcGaGUuGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 32223 0.69 0.685522
Target:  5'- cCGACGCCucggcacCGAGcUGCUCGAUGAGa -3'
miRNA:   3'- -GCUGCGGua-----GUUCcGCGAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 34557 0.7 0.642398
Target:  5'- --uUGCCGUCGGGGCcgaCGGCGAGGu -3'
miRNA:   3'- gcuGCGGUAGUUCCGcgaGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 35689 0.72 0.535177
Target:  5'- gCGACGCCGUgcccggCGAGGgguCGCU-GACGAGGu -3'
miRNA:   3'- -GCUGCGGUA------GUUCC---GCGAgUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 36019 0.74 0.397903
Target:  5'- gGugGCCAgCGAGGuCGacaugaUCAGCGAGGc -3'
miRNA:   3'- gCugCGGUaGUUCC-GCg-----AGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 36631 0.7 0.642398
Target:  5'- gCGcCGCCcgCAAGGCccGCgaUCAGCGAGc -3'
miRNA:   3'- -GCuGCGGuaGUUCCG--CG--AGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 41479 0.69 0.685522
Target:  5'- uGACGCCGUCGAGcaCGacCUCGGCGGuGGc -3'
miRNA:   3'- gCUGCGGUAGUUCc-GC--GAGUUGCU-CC- -5'
23407 3' -54.1 NC_005259.1 + 41640 0.69 0.664018
Target:  5'- gCGGUGCCgGUCugcGGGCGCUCggUGAGcGg -3'
miRNA:   3'- -GCUGCGG-UAGu--UCCGCGAGuuGCUC-C- -5'
23407 3' -54.1 NC_005259.1 + 46656 0.68 0.758665
Target:  5'- aCGGCuGCgGUUGAGGUuCUCGGCGAGc -3'
miRNA:   3'- -GCUG-CGgUAGUUCCGcGAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 48424 0.69 0.674789
Target:  5'- gCGAcCGCCAccacCGAGGCGCgaggCAGCGGc- -3'
miRNA:   3'- -GCU-GCGGUa---GUUCCGCGa---GUUGCUcc -5'
23407 3' -54.1 NC_005259.1 + 51775 0.68 0.73823
Target:  5'- gCGAgCGCCuugaggUAuucGGCGCUCGGCGGGu -3'
miRNA:   3'- -GCU-GCGGua----GUu--CCGCGAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 52401 0.73 0.444446
Target:  5'- uCGG-GCCAUCGagguguGGGCGCUCGACucGGg -3'
miRNA:   3'- -GCUgCGGUAGU------UCCGCGAGUUGcuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.