Results 1 - 20 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 3010 | 0.71 | 0.566921 |
Target: 5'- cCGACGCCAUCAccccaGCGCUCcAUGAc- -3' miRNA: 3'- -GCUGCGGUAGUuc---CGCGAGuUGCUcc -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 4105 | 0.68 | 0.73823 |
Target: 5'- uGAUGCCAaaccUCGGcGGC-CUCGACGuGGc -3' miRNA: 3'- gCUGCGGU----AGUU-CCGcGAGUUGCuCC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 5192 | 0.71 | 0.588351 |
Target: 5'- cCGACGCCGccgccaagcUCAccGCGCUCGcCGAGc -3' miRNA: 3'- -GCUGCGGU---------AGUucCGCGAGUuGCUCc -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 5234 | 0.72 | 0.524732 |
Target: 5'- cCGACGCUgagAUCGAuGUgugGCUCGGCGGGGa -3' miRNA: 3'- -GCUGCGG---UAGUUcCG---CGAGUUGCUCC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 9353 | 0.66 | 0.851648 |
Target: 5'- cCGAUGaCCGUCuguAGGuCGUacUCGGCGAGc -3' miRNA: 3'- -GCUGC-GGUAGu--UCC-GCG--AGUUGCUCc -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 15569 | 0.68 | 0.73823 |
Target: 5'- gGugGCCAcccUCGGGGCcaGCgCGACGGGc -3' miRNA: 3'- gCugCGGU---AGUUCCG--CGaGUUGCUCc -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 16478 | 0.7 | 0.641315 |
Target: 5'- aGAuCGCCGUCAAgGGCGCacccgCGcgcauggccgagaGCGAGGc -3' miRNA: 3'- gCU-GCGGUAGUU-CCGCGa----GU-------------UGCUCC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 16601 | 0.67 | 0.807372 |
Target: 5'- gCGAgGCCAUCGGacUGUUCAACGGGc -3' miRNA: 3'- -GCUgCGGUAGUUccGCGAGUUGCUCc -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 16646 | 0.68 | 0.73823 |
Target: 5'- gCGACGCCGccgacaauuUCGGGGUGaccgcCUCGAUGuGGu -3' miRNA: 3'- -GCUGCGGU---------AGUUCCGC-----GAGUUGCuCC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 16793 | 0.67 | 0.807372 |
Target: 5'- uCGACGCgGUCGcguacaucGCGCUCGGggcCGGGGu -3' miRNA: 3'- -GCUGCGgUAGUuc------CGCGAGUU---GCUCC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 17347 | 0.75 | 0.346357 |
Target: 5'- aCGuCGCCGUCGAGGUcggcgGCUCGGCGcuGGu -3' miRNA: 3'- -GCuGCGGUAGUUCCG-----CGAGUUGCu-CC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 17583 | 0.66 | 0.83279 |
Target: 5'- cCGACGCUgccgcgCAAccucGGCGCgaugacguggggCGGCGAGGa -3' miRNA: 3'- -GCUGCGGua----GUU----CCGCGa-----------GUUGCUCC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 17801 | 0.68 | 0.7687 |
Target: 5'- --cCGCgAUagCGAGGCcggugaGCUCAGCGAGGc -3' miRNA: 3'- gcuGCGgUA--GUUCCG------CGAGUUGCUCC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 18803 | 0.66 | 0.858243 |
Target: 5'- gGACGCCGcacccucaagacCAAGGUGCUguaucugccCggUGAGGg -3' miRNA: 3'- gCUGCGGUa-----------GUUCCGCGA---------GuuGCUCC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 18924 | 0.67 | 0.797945 |
Target: 5'- uCGGCGaCUcgaucauccugAUCAAGGCcagCAACGAGGa -3' miRNA: 3'- -GCUGC-GG-----------UAGUUCCGcgaGUUGCUCC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 19715 | 0.73 | 0.444446 |
Target: 5'- uGGCuGCCGcCGAGGUGaUCGACGGGGa -3' miRNA: 3'- gCUG-CGGUaGUUCCGCgAGUUGCUCC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 20433 | 0.66 | 0.851648 |
Target: 5'- cCGACGCCA-CA--GUGCUCcacGACGAGc -3' miRNA: 3'- -GCUGCGGUaGUucCGCGAG---UUGCUCc -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 20474 | 0.66 | 0.857427 |
Target: 5'- uGAcCGCCGUCGAccucgacaccgcccGGCaGCUCAucgGCGAcGGu -3' miRNA: 3'- gCU-GCGGUAGUU--------------CCG-CGAGU---UGCU-CC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 20849 | 0.75 | 0.371521 |
Target: 5'- cCGACGCCugCAAGGUGUUCGACGcgaucaagcAGGu -3' miRNA: 3'- -GCUGCGGuaGUUCCGCGAGUUGC---------UCC- -5' |
|||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 22701 | 0.68 | 0.758665 |
Target: 5'- cCGuCGCCGUCAccG-GCUCGAUGAGc -3' miRNA: 3'- -GCuGCGGUAGUucCgCGAGUUGCUCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home