miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23407 3' -54.1 NC_005259.1 + 24050 0.66 0.859869
Target:  5'- -aACGUCGUCGGcgcGGUGCUCAaucucgugcaccGCGAGa -3'
miRNA:   3'- gcUGCGGUAGUU---CCGCGAGU------------UGCUCc -5'
23407 3' -54.1 NC_005259.1 + 25470 0.7 0.609923
Target:  5'- uGACGaCAUCAugguguucaacaAGGCGCUCGcgcgUGAGGg -3'
miRNA:   3'- gCUGCgGUAGU------------UCCGCGAGUu---GCUCC- -5'
23407 3' -54.1 NC_005259.1 + 58786 0.7 0.631569
Target:  5'- -uGCGCCgGUCGAGGCGgugauugcCUCGGCGGGc -3'
miRNA:   3'- gcUGCGG-UAGUUCCGC--------GAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 54955 0.7 0.631569
Target:  5'- uCGACGCgucaucguCGUCAAGGCGCUCGuGCa--- -3'
miRNA:   3'- -GCUGCG--------GUAGUUCCGCGAGU-UGcucc -5'
23407 3' -54.1 NC_005259.1 + 16478 0.7 0.641315
Target:  5'- aGAuCGCCGUCAAgGGCGCacccgCGcgcauggccgagaGCGAGGc -3'
miRNA:   3'- gCU-GCGGUAGUU-CCGCGa----GU-------------UGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 34557 0.7 0.642398
Target:  5'- --uUGCCGUCGGGGCcgaCGGCGAGGu -3'
miRNA:   3'- gcuGCGGUAGUUCCGcgaGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 36631 0.7 0.642398
Target:  5'- gCGcCGCCcgCAAGGCccGCgaUCAGCGAGc -3'
miRNA:   3'- -GCuGCGGuaGUUCCG--CG--AGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 68864 0.7 0.642398
Target:  5'- uCGACuuGCCcgCGccGGGCGCgcCGAUGAGGu -3'
miRNA:   3'- -GCUG--CGGuaGU--UCCGCGa-GUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 41640 0.69 0.664018
Target:  5'- gCGGUGCCgGUCugcGGGCGCUCggUGAGcGg -3'
miRNA:   3'- -GCUGCGG-UAGu--UCCGCGAGuuGCUC-C- -5'
23407 3' -54.1 NC_005259.1 + 5192 0.71 0.588351
Target:  5'- cCGACGCCGccgccaagcUCAccGCGCUCGcCGAGc -3'
miRNA:   3'- -GCUGCGGU---------AGUucCGCGAGUuGCUCc -5'
23407 3' -54.1 NC_005259.1 + 3010 0.71 0.566921
Target:  5'- cCGACGCCAUCAccccaGCGCUCcAUGAc- -3'
miRNA:   3'- -GCUGCGGUAGUuc---CGCGAGuUGCUcc -5'
23407 3' -54.1 NC_005259.1 + 29357 0.71 0.556279
Target:  5'- aGAcCGCCGUCGAGGCaCcCGuCGAGGu -3'
miRNA:   3'- gCU-GCGGUAGUUCCGcGaGUuGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 17347 0.75 0.346357
Target:  5'- aCGuCGCCGUCGAGGUcggcgGCUCGGCGcuGGu -3'
miRNA:   3'- -GCuGCGGUAGUUCCG-----CGAGUUGCu-CC- -5'
23407 3' -54.1 NC_005259.1 + 22776 0.75 0.354608
Target:  5'- aGGCGCUgGUCAcugugcAGGUGCUCAcCGAGGg -3'
miRNA:   3'- gCUGCGG-UAGU------UCCGCGAGUuGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 20849 0.75 0.371521
Target:  5'- cCGACGCCugCAAGGUGUUCGACGcgaucaagcAGGu -3'
miRNA:   3'- -GCUGCGGuaGUUCCGCGAGUUGC---------UCC- -5'
23407 3' -54.1 NC_005259.1 + 36019 0.74 0.397903
Target:  5'- gGugGCCAgCGAGGuCGacaugaUCAGCGAGGc -3'
miRNA:   3'- gCugCGGUaGUUCC-GCg-----AGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 19715 0.73 0.444446
Target:  5'- uGGCuGCCGcCGAGGUGaUCGACGGGGa -3'
miRNA:   3'- gCUG-CGGUaGUUCCGCgAGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 52401 0.73 0.444446
Target:  5'- uCGG-GCCAUCGagguguGGGCGCUCGACucGGg -3'
miRNA:   3'- -GCUgCGGUAGU------UCCGCGAGUUGcuCC- -5'
23407 3' -54.1 NC_005259.1 + 5234 0.72 0.524732
Target:  5'- cCGACGCUgagAUCGAuGUgugGCUCGGCGGGGa -3'
miRNA:   3'- -GCUGCGG---UAGUUcCG---CGAGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 35689 0.72 0.535177
Target:  5'- gCGACGCCGUgcccggCGAGGgguCGCU-GACGAGGu -3'
miRNA:   3'- -GCUGCGGUA------GUUCC---GCGAgUUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.