miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2341 5' -48.2 NC_001416.1 + 10617 1.1 0.003641
Target:  5'- aCUCAAAUCAACGACCAGAUCGCCUACc -3'
miRNA:   3'- -GAGUUUAGUUGCUGGUCUAGCGGAUG- -5'
2341 5' -48.2 NC_001416.1 + 3082 0.7 0.828135
Target:  5'- ----cGUUAuuGCGuACCAGAUCGUCUGCg -3'
miRNA:   3'- gaguuUAGU--UGC-UGGUCUAGCGGAUG- -5'
2341 5' -48.2 NC_001416.1 + 17659 0.7 0.846934
Target:  5'- -aCGAuacCGACG-CCGGAUCGcCCUGCu -3'
miRNA:   3'- gaGUUua-GUUGCuGGUCUAGC-GGAUG- -5'
2341 5' -48.2 NC_001416.1 + 7140 0.69 0.8893
Target:  5'- --uGAAUCAugGugaacucacgcGCCGGAUCGCCg-- -3'
miRNA:   3'- gagUUUAGUugC-----------UGGUCUAGCGGaug -5'
2341 5' -48.2 NC_001416.1 + 45621 0.68 0.904221
Target:  5'- aCUCAAAUCAACaggcGCCGGA-CGCUa-- -3'
miRNA:   3'- -GAGUUUAGUUGc---UGGUCUaGCGGaug -5'
2341 5' -48.2 NC_001416.1 + 45276 0.68 0.929771
Target:  5'- aUCGAcgCAACGAUguGcgccauuAUCGCCUGg -3'
miRNA:   3'- gAGUUuaGUUGCUGguC-------UAGCGGAUg -5'
2341 5' -48.2 NC_001416.1 + 41615 0.67 0.956041
Target:  5'- --aAAAUCAACGcaaaaaAUCGGAcUUGCCUGCa -3'
miRNA:   3'- gagUUUAGUUGC------UGGUCU-AGCGGAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.