miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23410 3' -61.1 NC_005259.1 + 68786 0.67 0.426532
Target:  5'- aGCaGGUcGUacgcCGGgGC-GGUGUCGGUGCc -3'
miRNA:   3'- -CG-CCGaCA----GCCgCGuCCACAGCCGCG- -5'
23410 3' -61.1 NC_005259.1 + 66185 0.68 0.391517
Target:  5'- gGCaccGCUGcCGGUGCAGuacggGUCaGGCGCg -3'
miRNA:   3'- -CGc--CGACaGCCGCGUCca---CAG-CCGCG- -5'
23410 3' -61.1 NC_005259.1 + 65104 0.67 0.45398
Target:  5'- cGUGGCacgGUCaGUGCGucaccGUCGGCGCa -3'
miRNA:   3'- -CGCCGa--CAGcCGCGUcca--CAGCCGCG- -5'
23410 3' -61.1 NC_005259.1 + 64142 0.66 0.469005
Target:  5'- aGCGGCccGUCGGCGaugcccuugacGUaGUCGGCGa -3'
miRNA:   3'- -CGCCGa-CAGCCGCguc--------CA-CAGCCGCg -5'
23410 3' -61.1 NC_005259.1 + 62849 0.66 0.482357
Target:  5'- cGCGGUUGacgagcagccgcUCGGCGCgAGGUa--GGcCGCu -3'
miRNA:   3'- -CGCCGAC------------AGCCGCG-UCCAcagCC-GCG- -5'
23410 3' -61.1 NC_005259.1 + 61926 0.68 0.400095
Target:  5'- uCGGCagcucgGUCucucGCGCGGGUGcCGGgGCc -3'
miRNA:   3'- cGCCGa-----CAGc---CGCGUCCACaGCCgCG- -5'
23410 3' -61.1 NC_005259.1 + 58941 0.7 0.277872
Target:  5'- cGCGGUggcagcGUCGGCcuuggccaGCAGGUcgggcagcucGUCGGCGa -3'
miRNA:   3'- -CGCCGa-----CAGCCG--------CGUCCA----------CAGCCGCg -5'
23410 3' -61.1 NC_005259.1 + 58587 0.69 0.31549
Target:  5'- cGCGGCUGccgggccggaucuuuUCGaGCGCcuGGcugaUGUCGGCGa -3'
miRNA:   3'- -CGCCGAC---------------AGC-CGCGu-CC----ACAGCCGCg -5'
23410 3' -61.1 NC_005259.1 + 57022 0.7 0.284559
Target:  5'- cGCGGC--UCGGCGC-GGUGg-GGuCGCa -3'
miRNA:   3'- -CGCCGacAGCCGCGuCCACagCC-GCG- -5'
23410 3' -61.1 NC_005259.1 + 53529 0.74 0.156577
Target:  5'- aGCGGCacggGcUCGGUGCccGGUGUCGGCu- -3'
miRNA:   3'- -CGCCGa---C-AGCCGCGu-CCACAGCCGcg -5'
23410 3' -61.1 NC_005259.1 + 52382 0.74 0.156577
Target:  5'- aGCGGCUGcgcagccugccUCGG-GCcaucgAGGUGUgGGCGCu -3'
miRNA:   3'- -CGCCGAC-----------AGCCgCG-----UCCACAgCCGCG- -5'
23410 3' -61.1 NC_005259.1 + 50967 0.67 0.426532
Target:  5'- cGUGGCUGUcccacgCGGCGagcGGUGUcgagucacCGGCGa -3'
miRNA:   3'- -CGCCGACA------GCCGCgu-CCACA--------GCCGCg -5'
23410 3' -61.1 NC_005259.1 + 49065 0.7 0.303247
Target:  5'- uCGGCgGUUGGCGCaagggaucgcucgaGGGUGUCauGGcCGCc -3'
miRNA:   3'- cGCCGaCAGCCGCG--------------UCCACAG--CC-GCG- -5'
23410 3' -61.1 NC_005259.1 + 47176 0.79 0.064993
Target:  5'- aGCGGCgaagGUCGGCGguGccGUCGGCGa -3'
miRNA:   3'- -CGCCGa---CAGCCGCguCcaCAGCCGCg -5'
23410 3' -61.1 NC_005259.1 + 45496 0.68 0.391517
Target:  5'- gGUGGCcuugGUCGcuguggccaccGCGCcGGUGUUGGcCGCc -3'
miRNA:   3'- -CGCCGa---CAGC-----------CGCGuCCACAGCC-GCG- -5'
23410 3' -61.1 NC_005259.1 + 42613 0.66 0.498814
Target:  5'- gGCGGUcaugagcccgaUGUCGcGCGUAGGcaccucggccccgaUGUgGGCGg -3'
miRNA:   3'- -CGCCG-----------ACAGC-CGCGUCC--------------ACAgCCGCg -5'
23410 3' -61.1 NC_005259.1 + 41101 0.66 0.49979
Target:  5'- uCGGCgGUCGGCGguaugacgaUGUCGGCGg -3'
miRNA:   3'- cGCCGaCAGCCGCgucc-----ACAGCCGCg -5'
23410 3' -61.1 NC_005259.1 + 40940 0.69 0.342637
Target:  5'- uGCGGCUGa-GGUauGCAGaGUGauccUUGGCGCu -3'
miRNA:   3'- -CGCCGACagCCG--CGUC-CAC----AGCCGCG- -5'
23410 3' -61.1 NC_005259.1 + 40894 0.67 0.45398
Target:  5'- cGUGGCgggGUCGGCaGCGucccacgcuuGGUGaUCGGauuGCg -3'
miRNA:   3'- -CGCCGa--CAGCCG-CGU----------CCAC-AGCCg--CG- -5'
23410 3' -61.1 NC_005259.1 + 39835 0.68 0.374727
Target:  5'- aGCGcGUUgGUCGGCGaCAGGaUGcCGGUGa -3'
miRNA:   3'- -CGC-CGA-CAGCCGC-GUCC-ACaGCCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.