Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23410 | 3' | -61.1 | NC_005259.1 | + | 784 | 0.65 | 0.518487 |
Target: 5'- gGCGGCUGcccUCGGUuggguggccaagggGcCGGGUGUCGagaccuCGCa -3' miRNA: 3'- -CGCCGAC---AGCCG--------------C-GUCCACAGCc-----GCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 3164 | 0.67 | 0.435573 |
Target: 5'- aCGGUgaUGccCGGCGaugucaAGGUcGUCGGUGCg -3' miRNA: 3'- cGCCG--ACa-GCCGCg-----UCCA-CAGCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 7239 | 0.66 | 0.501744 |
Target: 5'- aCGGCaG-CcGCGCcGGUGUCGaGUGCg -3' miRNA: 3'- cGCCGaCaGcCGCGuCCACAGC-CGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 11100 | 0.69 | 0.35047 |
Target: 5'- cGCaGGUguucuUGUUGGUGCGacGGUGaCGGUGCg -3' miRNA: 3'- -CG-CCG-----ACAGCCGCGU--CCACaGCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 11385 | 0.67 | 0.435573 |
Target: 5'- cGUGGUUGUCGGUGUGccucaagcGGUuUCGGCu- -3' miRNA: 3'- -CGCCGACAGCCGCGU--------CCAcAGCCGcg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 13458 | 0.67 | 0.435573 |
Target: 5'- uCGGCg--CGGCGCuGGUGcUCaccGCGCu -3' miRNA: 3'- cGCCGacaGCCGCGuCCAC-AGc--CGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 19839 | 0.73 | 0.187316 |
Target: 5'- cGCGGCUGcugCcGCGCucGGUGU-GGCGCu -3' miRNA: 3'- -CGCCGACa--GcCGCGu-CCACAgCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 26810 | 0.73 | 0.192119 |
Target: 5'- cCGGUUGgccgguacCGGCGguGGUGcCGGgGCg -3' miRNA: 3'- cGCCGACa-------GCCGCguCCACaGCCgCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 27145 | 0.7 | 0.275233 |
Target: 5'- gGCGGCUG-CGGUGUuGGggccaacgaugccGUCGGCGa -3' miRNA: 3'- -CGCCGACaGCCGCGuCCa------------CAGCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 27392 | 0.72 | 0.228836 |
Target: 5'- gGCGGCggUGUCGGCaGCGGcGgcagcUCGGUGCc -3' miRNA: 3'- -CGCCG--ACAGCCG-CGUC-Cac---AGCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 27972 | 0.7 | 0.271311 |
Target: 5'- cGUGGCcaaUGUuccucccuugggUGGUGCGGGUGcCGGgGCg -3' miRNA: 3'- -CGCCG---ACA------------GCCGCGUCCACaGCCgCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 29957 | 0.66 | 0.492007 |
Target: 5'- cGCGGCUGgUGGgGCGGG---CGGUGa -3' miRNA: 3'- -CGCCGACaGCCgCGUCCacaGCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 34013 | 0.74 | 0.156577 |
Target: 5'- cCGGCUGUaucCGGCcucgGCGGcGUgcGUCGGCGCg -3' miRNA: 3'- cGCCGACA---GCCG----CGUC-CA--CAGCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 37065 | 0.66 | 0.460521 |
Target: 5'- gGCGGCggUGUccacguccacgcacCGGCGguGGUGUagacGCGUg -3' miRNA: 3'- -CGCCG--ACA--------------GCCGCguCCACAgc--CGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 39760 | 0.69 | 0.342637 |
Target: 5'- aGCGGCaGcagCGGCagccugcuGCuGGUGaUCGGUGCg -3' miRNA: 3'- -CGCCGaCa--GCCG--------CGuCCAC-AGCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 39835 | 0.68 | 0.374727 |
Target: 5'- aGCGcGUUgGUCGGCGaCAGGaUGcCGGUGa -3' miRNA: 3'- -CGC-CGA-CAGCCGC-GUCC-ACaGCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 40894 | 0.67 | 0.45398 |
Target: 5'- cGUGGCgggGUCGGCaGCGucccacgcuuGGUGaUCGGauuGCg -3' miRNA: 3'- -CGCCGa--CAGCCG-CGU----------CCAC-AGCCg--CG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 40940 | 0.69 | 0.342637 |
Target: 5'- uGCGGCUGa-GGUauGCAGaGUGauccUUGGCGCu -3' miRNA: 3'- -CGCCGACagCCG--CGUC-CAC----AGCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 41101 | 0.66 | 0.49979 |
Target: 5'- uCGGCgGUCGGCGguaugacgaUGUCGGCGg -3' miRNA: 3'- cGCCGaCAGCCGCgucc-----ACAGCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 42613 | 0.66 | 0.498814 |
Target: 5'- gGCGGUcaugagcccgaUGUCGcGCGUAGGcaccucggccccgaUGUgGGCGg -3' miRNA: 3'- -CGCCG-----------ACAGC-CGCGUCC--------------ACAgCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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