Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23410 | 3' | -61.1 | NC_005259.1 | + | 45496 | 0.68 | 0.391517 |
Target: 5'- gGUGGCcuugGUCGcuguggccaccGCGCcGGUGUUGGcCGCc -3' miRNA: 3'- -CGCCGa---CAGC-----------CGCGuCCACAGCC-GCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 47176 | 0.79 | 0.064993 |
Target: 5'- aGCGGCgaagGUCGGCGguGccGUCGGCGa -3' miRNA: 3'- -CGCCGa---CAGCCGCguCcaCAGCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 49065 | 0.7 | 0.303247 |
Target: 5'- uCGGCgGUUGGCGCaagggaucgcucgaGGGUGUCauGGcCGCc -3' miRNA: 3'- cGCCGaCAGCCGCG--------------UCCACAG--CC-GCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 50967 | 0.67 | 0.426532 |
Target: 5'- cGUGGCUGUcccacgCGGCGagcGGUGUcgagucacCGGCGa -3' miRNA: 3'- -CGCCGACA------GCCGCgu-CCACA--------GCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 52382 | 0.74 | 0.156577 |
Target: 5'- aGCGGCUGcgcagccugccUCGG-GCcaucgAGGUGUgGGCGCu -3' miRNA: 3'- -CGCCGAC-----------AGCCgCG-----UCCACAgCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 53529 | 0.74 | 0.156577 |
Target: 5'- aGCGGCacggGcUCGGUGCccGGUGUCGGCu- -3' miRNA: 3'- -CGCCGa---C-AGCCGCGu-CCACAGCCGcg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 57022 | 0.7 | 0.284559 |
Target: 5'- cGCGGC--UCGGCGC-GGUGg-GGuCGCa -3' miRNA: 3'- -CGCCGacAGCCGCGuCCACagCC-GCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 58587 | 0.69 | 0.31549 |
Target: 5'- cGCGGCUGccgggccggaucuuuUCGaGCGCcuGGcugaUGUCGGCGa -3' miRNA: 3'- -CGCCGAC---------------AGC-CGCGu-CC----ACAGCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 58941 | 0.7 | 0.277872 |
Target: 5'- cGCGGUggcagcGUCGGCcuuggccaGCAGGUcgggcagcucGUCGGCGa -3' miRNA: 3'- -CGCCGa-----CAGCCG--------CGUCCA----------CAGCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 61926 | 0.68 | 0.400095 |
Target: 5'- uCGGCagcucgGUCucucGCGCGGGUGcCGGgGCc -3' miRNA: 3'- cGCCGa-----CAGc---CGCGUCCACaGCCgCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 62849 | 0.66 | 0.482357 |
Target: 5'- cGCGGUUGacgagcagccgcUCGGCGCgAGGUa--GGcCGCu -3' miRNA: 3'- -CGCCGAC------------AGCCGCG-UCCAcagCC-GCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 64142 | 0.66 | 0.469005 |
Target: 5'- aGCGGCccGUCGGCGaugcccuugacGUaGUCGGCGa -3' miRNA: 3'- -CGCCGa-CAGCCGCguc--------CA-CAGCCGCg -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 65104 | 0.67 | 0.45398 |
Target: 5'- cGUGGCacgGUCaGUGCGucaccGUCGGCGCa -3' miRNA: 3'- -CGCCGa--CAGcCGCGUcca--CAGCCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 66185 | 0.68 | 0.391517 |
Target: 5'- gGCaccGCUGcCGGUGCAGuacggGUCaGGCGCg -3' miRNA: 3'- -CGc--CGACaGCCGCGUCca---CAG-CCGCG- -5' |
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23410 | 3' | -61.1 | NC_005259.1 | + | 68786 | 0.67 | 0.426532 |
Target: 5'- aGCaGGUcGUacgcCGGgGC-GGUGUCGGUGCc -3' miRNA: 3'- -CG-CCGaCA----GCCgCGuCCACAGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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